Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2583 ATGTTGGCGACAATAATGTACTCATCCGAGGGAGAAGTATACAACCTGTCATCAAATGCAGAGTGCATGCATGGAGAAGAATTGAGTCAATCAAAAGAACATGAAAAGATCAATGACTTGCGAGAAAGAGGATATATGGAACACGGATGTCAACATTACCGGAAAAGATGCCGTATTAGGGCCCCCTGCTGCAACGAGATTTTCCACTGTCGCCACTGTCATAATGAGGCAAAGTATGATATCAGGATTGTTCCGAAGCTTAGACATGACATTCCCCGTCATCAAGTTAAACATGTGATATGTTCACTTTGTGGGATTGAACAAGAGGTTCAGCAAAACTGCATTAATTGTGGAGTTTGTATGGGCAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACTGGAGGATCTGAAAATTACTTCCACTGCGACAAGTGTGGTTGTTGCCACTCAACTCTGCTAAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCGAATCGATGCATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTCTGAATGAAATGAGACAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTTTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACTATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAGAACTAGTAACGTAAAGTACCATCTTATTGCTCAAAAGTGCTTGAATTGCAAATCCTACAACACAAGACAAACTTGA 882 0.4059 MLATIMYSSEGEVYNLSSNAECMHGEELSQSKEHEKINDLRERGYMEHGCQHYRKRCRIRAPCCNEIFHCRHCHNEAKYDIRIVPKLRHDIPRHQVKHVICSLCGIEQEVQQNCINCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENYFHCDKCGCCHSTLLKNSHACVEKAMHHDCPVCFEYLFESMHEIAVLPCGHTIHINCLNEMRQHLQYACPLCSKSVFDMSKVWEKFDLEIAATPMPELYQNKMVWILCNDCGRTSNVKYHLIAQKCLNCKSYNTRQT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2583 293 SUPERFAMILY CHY zinc finger-like 47 121 IPR037274 GO:0008270
Ahy18g2583 293 SMART ring_2 186 228 IPR001841 -
Ahy18g2583 293 Pfam CHY zinc finger 50 131 IPR008913 GO:0008270
Ahy18g2583 293 SUPERFAMILY RING/U-box 185 235 - -
Ahy18g2583 293 ProSiteProfiles Zinc finger CHY-type profile. 43 119 IPR008913 GO:0008270
Ahy18g2583 293 Pfam Ring finger domain 185 228 IPR001841 -
Ahy18g2583 293 SUPERFAMILY Zinc hairpin stack 122 179 IPR037275 -
Ahy18g2583 293 ProSiteProfiles Zinc finger RING-type profile. 186 229 IPR001841 -
Ahy18g2583 293 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 293 - -
Ahy18g2583 293 Pfam Zinc-ribbon 233 291 IPR039512 -
Ahy18g2583 293 ProSiteProfiles Zinc finger CTCHY-type profile. 121 185 IPR017921 -
Ahy18g2583 293 Gene3D - 257 293 - -
Ahy18g2583 293 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 15 293 - -
Ahy18g2583 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2583 Ahy-Chr18 127910428 127916462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2583 48 291 C2H2 Transcription Factor Family AT3G18290 39.200 3.79e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2583 K10144 - gmx:100803569 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2583 18 127910428 127916462 Ahy18g2583 18 127910428 127916462 ECH
Ahy18g2583 18 127910428 127916462 Ahy8g2351 8 45934849 45941477 hybridization
Ahy16g2924 16 143558147 143563830 Ahy18g2583 18 127910428 127916462 PCT