Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2581 ATGGTTGATGTCTGCAGTTTCAGTTTGAGTGCAGTAACATCAAATATAGAGTACAATATGAGGGAGAACTGTACAATCTGTCATCAAATGCAAAGTGGCATGCATGGAGAAAAATTGGATCAATCAAAAGAACATGTAAAGATCAAAGACTTGCGAGAGAGAGGATATATGGAACACGGATGTCAACATTACCGGAGAAGATGCCGTATTAGAGCCCCCTGCTGCAACGAGATTTTCCACTGTTGCCATTGTCATAATGAGGCAAAGGATGATATCAGGATTGTTCCGAAGCTTAGACATGACATTCCCTGTCATCAAATTAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGCATTAATTGTGGAGTTTGTATGGGCAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACCGGAGGATCTGAAAATTACTTCCACTGCGACAAGTGTGGTTGTTGCCACTCAACTCTGCTGAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCAAATCGATGCATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTCTGAATGAAATGAGACAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTTTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACTATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAGAACTAGTAACGTAAAGTACCATCTTATTGCTCAAAAGTGCTTGAATTGCAAATCCTACAACACAAGACAAACTTGA 915 0.4011 MVDVCSFSLSAVTSNIEYNMRENCTICHQMQSGMHGEKLDQSKEHVKIKDLRERGYMEHGCQHYRRRCRIRAPCCNEIFHCCHCHNEAKDDIRIVPKLRHDIPCHQIKQVICSLCGTEQEVQQNCINCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENYFHCDKCGCCHSTLLKNSHACVEKAMHHDCPVCFEYLFKSMHEIAVLPCGHTIHINCLNEMRQHLQYACPLCSKSVFDMSKVWEKFDLEIAATPMPELYQNKMVWILCNDCGRTSNVKYHLIAQKCLNCKSYNTRQT* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2581 304 Pfam Zinc-ribbon 244 302 IPR039512 -
Ahy18g2581 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 258 IPR013083 -
Ahy18g2581 304 SMART ring_2 197 239 IPR001841 -
Ahy18g2581 304 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Ahy18g2581 304 Pfam Ring finger domain 196 239 IPR001841 -
Ahy18g2581 304 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 21 304 - -
Ahy18g2581 304 Gene3D - 268 304 - -
Ahy18g2581 304 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Ahy18g2581 304 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 304 - -
Ahy18g2581 304 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Ahy18g2581 304 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
Ahy18g2581 304 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Ahy18g2581 304 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Ahy18g2581 304 SUPERFAMILY RING/U-box 195 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2581 Ahy-Chr18 127871539 127890898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2581 59 302 C2H2 Transcription Factor Family AT3G18290 38.800 6.68e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2581 K10144 - gmx:100803569 505.368