Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2546 ATGGATGACTATTCTGGAAAAAGAGCAATTGATGGGGTGGTAGTCCCTAAAAAGGGGATGGGCCATTTGTTTAGAGATTCTGCTAATACTAGAGATAGAAATGGTCAAGTGTGCAGCCGTCTTGGTTGCAGTAGTAAAGTCAACTCTCCTAAAGGTTCTCAAATTGGTTCTTCTGAAAAGGGTAAATCTTTGAAAACTTCTTTTCGAACTACATCCAGTGGTAAGGAAGCAATTGGGAGTTCTTCTAGAACTTTCACAGGGAATAATAACTCAGGAAAATCCCTTATAAAACCTCGGAAGACATTATCCTCTCAATTAGAGGCTGATTCTTCAGAAACTAGTAGTGTACATGATGAGACAGATATTTCAAATCTTGTCCCTCCATCTGAAAACTTTCGGAGAGTACTTCAAGCTGAAGTAGAAAATGTAGGATCCAGTAGTGTTGTGCAGATGGAAGTAGGGAGCTCTAGTGTAGCATCATCTAATACAGGATCACGGAGGAATTTCCATCCAAAGCCTGGTTTGCGTGGTCAAGAAACTAAAAGCACTGGCGCAGCAACACGAGCCGGGACCAGTAGGTACGGATTAAGAAACCTCAGATGCAACTCCATATCTGATGTCGTCCCTGCTGGCATTCAACCACCAGACTCGGCCAATAATAGAAGAAAGGATACAGTAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCAACAGCTAGAGGGAAGAAGATCAATGGTTCTTCATTAGAAGGACGGAATTCTGGTCCTAGAAATGGTATATCTATCTCTGATTCAAGAAGACCCAGAAATATGCCTTCTAATAATAGGGACAGGCCAGACAGCAATGTAATGTCAGTCAGAACGCGGAGGCCGACTAATGGTAATGCGAGGGGACGACTTTCTAACCAAAGTAATCCTAATCCCGTGGCATCGAATGAGCCTGTTGTCATGATACCTACTTTGCCTCATTCAGGTGATCATAATGCTCCTGGTGTATTGCATCTCACTTCTCTGGAGGCTCCTTTAAGCCGTCCTGTCTCTTACAATAGACCTGGTAGTAGCAGTGATGAACTGTATGGTATTATGCCTATGTCTCCCACAGAATATGGCATCACTCATTCTCTTATAAATCGGGACAACTTTCGACGACGCTATAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGAATTGAGCAAGATGTTGAGCTAACACACGAGCAAATTCTTTTACTCGAGTCGAACTTGCTCCTCACTGGACTAAACTTCTATGATCAACATAGAGACATGCGGTTGGACATTGATAACATGTCATATGAGGAACTATTAGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCATTATCAGAGTGCCTAAAGAGAAGTTTCTTCAAATCCTTACCTTCAGATGATGTAACTGAGACTTTCAATGGGAATAAGAATAAGGACGATACCAAATGTAGCATCTGTCAGGAGGAATATGTGGTTGGAGATGAGGTGGGGAATTTGCAATGTCAACATATGTTCCATGTGGTTTGCATCCAACAATGGCTGAGGCTCAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCAAAGTCATCAACTCCGCCGTCACCGCCGCCGTCGTCATCATCACCTTCATCCTATTGA 1677 0.4293 MDDYSGKRAIDGVVVPKKGMGHLFRDSANTRDRNGQVCSRLGCSSKVNSPKGSQIGSSEKGKSLKTSFRTTSSGKEAIGSSSRTFTGNNNSGKSLIKPRKTLSSQLEADSSETSSVHDETDISNLVPPSENFRRVLQAEVENVGSSSVVQMEVGSSSVASSNTGSRRNFHPKPGLRGQETKSTGAATRAGTSRYGLRNLRCNSISDVVPAGIQPPDSANNRRKDTVKKRNCEGESSSTARGKKINGSSLEGRNSGPRNGISISDSRRPRNMPSNNRDRPDSNVMSVRTRRPTNGNARGRLSNQSNPNPVASNEPVVMIPTLPHSGDHNAPGVLHLTSLEAPLSRPVSYNRPGSSSDELYGIMPMSPTEYGITHSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLLLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSFFKSLPSDDVTETFNGNKNKDDTKCSICQEEYVVGDEVGNLQCQHMFHVVCIQQWLRLKNWCPICKASVAKSSTPPSPPPSSSSPSSY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2546 558 MobiDBLite consensus disorder prediction 30 126 - -
Ahy18g2546 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 540 IPR045191 GO:0061630
Ahy18g2546 558 MobiDBLite consensus disorder prediction 154 191 - -
Ahy18g2546 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 540 - -
Ahy18g2546 558 SUPERFAMILY RING/U-box 483 542 - -
Ahy18g2546 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 548 IPR013083 -
Ahy18g2546 558 MobiDBLite consensus disorder prediction 19 126 - -
Ahy18g2546 558 Coils Coil 397 417 - -
Ahy18g2546 558 MobiDBLite consensus disorder prediction 237 311 - -
Ahy18g2546 558 Pfam Ring finger domain 494 536 IPR001841 -
Ahy18g2546 558 ProSiteProfiles Zinc finger RING-type profile. 495 536 IPR001841 -
Ahy18g2546 558 MobiDBLite consensus disorder prediction 206 312 - -
Ahy18g2546 558 MobiDBLite consensus disorder prediction 220 236 - -
Ahy18g2546 558 MobiDBLite consensus disorder prediction 154 168 - -
Ahy18g2546 558 SMART ring_2 495 535 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2546 Ahy-Chr18 127178961 127183886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2546 375 542 C3H Transcription Factor Family AT2G15530 38.506 2.08e-33 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2546 18 127178961 127183886 Ahy18g2546 18 127178961 127183886 ECH
Ahy18g2546 18 127178961 127183886 Ahy8g2322 8 45562212 45567158 hybridization