Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2451 ATGGCCAACGCCAAAAGCAACAGATTTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCTGTGTTGCTTCTCCCATGAGAGAAATGAGGCTTCTTCAGATATTTGCTTGTTCTATCAGAAGGGCTACTGTGCTTATGGCAGTCAATGCAGGAATAGGCATGTCAAACCATCACAAGCATCAGCATCAGCAAATGGACCTGTATCTTTGGTTTCACAATCTGCCATGACTCATAGTGCTGCTAAGGGAAAGTTTACTTGGGTTCGGAAGGCGGATACGAAAGTGTTGTCACCAACTGACAAACACACTAGTAGCTTACAACACAAGAATCAACATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCGAGCACTGCTGCTATGCTGGATGAGAATTTGTTCTGTGAATTTGATGCGGCCAACTGCACCTCAGGGGATAAGTGTACCAAAATTCATGGAATCCTCTGCTTGTACTGCAGAAAGCCTTGTCTGCATCCAACCAATCTGAAACAAAGGTCGAACCACTTTAAGATATGCAAGGAAAAGGCTGAGATAATGAAGAATAGTCAAGATATAGAATGCAGTGTTTGCCTGGAGCGCGTTCTGCTGAAGCCTAGACCATCTCGGCGCAAGTTTGGTTTGCTATCTGAATGTGACCATCCTTTCTGTTTAGATTGCATCATCAGTTGGCGCAATTTGGCCCCAACCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCATCTTTTTATGTTCAAAGTGACATTTGGTATGCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTACAAGGCGAACTGCAAGTTGATTGATTGCAAGTATTTTAAATTTGGAACCAGGCAGTGCCCTTATGGAACTAGTTGTATGTATAAGCATGCTGTAAAACCTGTCTTGCGCGAACAGAGGCAAAACAGGCCACGACCTCAAATTGGAGGAGACAATCTCAACGAATATGACATCATGTCTCAGCTCAGTGAATTTGATTTGCATCCTCATGAGTTTTATTCTATCTTGAAAGACATGGAGTGGTTCGATGATATGAGTGCAATGGAGAAGATGGCTTTAGCTGATGAACTGGCTGGTCCTACTTACGGAGATTCACATTTCTTTCCTCAGGATGATTTCTTTGATAGTGATGATGATTTTGATGATGAAGAATTCGATCCTATTGATGCTGCAATATCATCAATGATGATGTCTGGTATGCCAGTATTTGGATTCAGTGATGACGAATACAGCGACAATGAAGCCAGGGATGGCAAAGACAGTGATGGCAAATCCATTGATGATGATTAA 1326 0.4253 MANAKSNRFCKFYARGTCLKGELCCFSHERNEASSDICLFYQKGYCAYGSQCRNRHVKPSQASASANGPVSLVSQSAMTHSAAKGKFTWVRKADTKVLSPTDKHTSSLQHKNQHSQGTHCEVGESSTAAMLDENLFCEFDAANCTSGDKCTKIHGILCLYCRKPCLHPTNLKQRSNHFKICKEKAEIMKNSQDIECSVCLERVLLKPRPSRRKFGLLSECDHPFCLDCIISWRNLAPTNAMDCPVCRKHSSFYVQSDIWYATKEEKQAIIDNYKANCKLIDCKYFKFGTRQCPYGTSCMYKHAVKPVLREQRQNRPRPQIGGDNLNEYDIMSQLSEFDLHPHEFYSILKDMEWFDDMSAMEKMALADELAGPTYGDSHFFPQDDFFDSDDDFDDEEFDPIDAAISSMMMSGMPVFGFSDDEYSDNEARDGKDSDGKSIDDD* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2451 441 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Ahy18g2451 441 SUPERFAMILY RING/U-box 189 253 - -
Ahy18g2451 441 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Ahy18g2451 441 SMART c3hfinal6 33 58 IPR000571 GO:0046872
Ahy18g2451 441 SMART c3hfinal6 276 304 IPR000571 GO:0046872
Ahy18g2451 441 SMART c3hfinal6 6 30 IPR000571 GO:0046872
Ahy18g2451 441 SUPERFAMILY CCCH zinc finger 5 29 IPR036855 GO:0046872
Ahy18g2451 441 MobiDBLite consensus disorder prediction 421 441 - -
Ahy18g2451 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 276 IPR013083 -
Ahy18g2451 441 SMART ring_2 196 246 IPR001841 -
Ahy18g2451 441 MobiDBLite consensus disorder prediction 100 119 - -
Ahy18g2451 441 Pfam Zinc finger, C3HC4 type (RING finger) 196 246 IPR018957 GO:0046872
Ahy18g2451 441 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 6 428 - -
Ahy18g2451 441 MobiDBLite consensus disorder prediction 417 441 - -
Ahy18g2451 441 ProSiteProfiles Zinc finger C3H1-type profile. 4 31 IPR000571 GO:0046872
Ahy18g2451 441 Gene3D - 1 69 - -
Ahy18g2451 441 ProSiteProfiles Zinc finger C3H1-type profile. 276 305 IPR000571 GO:0046872
Ahy18g2451 441 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Ahy18g2451 441 ProSiteProfiles Zinc finger RING-type profile. 196 247 IPR001841 -
Ahy18g2451 441 Pfam RNA-binding, Nab2-type zinc finger 37 56 - -
Ahy18g2451 441 Pfam RNA-binding, Nab2-type zinc finger 10 28 - -
Ahy18g2451 441 Pfam RNA-binding, Nab2-type zinc finger 281 303 - -
Ahy18g2451 441 PANTHER MAKORIN-RELATED 6 428 IPR045072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2451 Ahy-Chr18 125307763 125314844 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy18g2451 zf-C3HC4 1.20E-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2451 K15687 - gmx:100788886 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2451 18 125307763 125314844 Ahy18g2451 18 125307763 125314844 ECH