Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2443 ATGACCAGTGTTGAAGGTGCTACTAGGAAAAATCATGGGCACAGAGCTGAGCTATATGCTGCTCGTGTTGCAAAGTGCTTAGCTGCTCTGGAGGGACGTGATAAGGTAGAACTGGTTATTCTTCCCCAGTCAATTGTTAGTGAGAACCCACCAGAGCAGCAAAATCAGCAGCCTCCCCCTCCACCTCCACCTCCCCAAAACCAAGAAGGCGATGAACAGAATGAAGAGGAAGAACAAGAGGATGAAAATGATAAAGAGAATGAGCAGCAGCAAGAGCAATTACTTGAAGAGTTTATCTTTGATGCTGAAGATGGCTTGATCACCTCGTCTCACACATTCACTGTGATGGACTCTTGTGACAAGATGAATGGAGGAGCTGTGAATATTGTTTCTGGTGGTGGTAACAAGAAAGGGAGTGATAATGGCAGCTGCTGCAACTGCCAAAAAAGTCGATGCTTGCAACTTTATTGTGAATGTCTTCGTGCTGGAAATTTGTGCAACAATTCTTGTACTTGCAAAGCGTGCGAGAATAATGAGAATAACAGGGATAAAGTGTATGAGAAGAAAAAAGAAATAGAATTACGTGATCCAGAGGCGTTTCAATCCAAGATTATTATTGGTGGGAACGAAGCAGCAAGGCACAGAAAAGGATGCAACTGCAGGAAATCAAAGTGCAAGAACAAGCACTGCGCTTGCTTCAGTGCTGGAGTTGGCTGCTCTAATCAGTGTAAATGTGACGATTGCATGAATGAGTATGGAATCGTCAACAACCAACAAGTACATGTTTTGACTAATGATAGTAATAATAATGGCAGCAACAACAATGGCAGCAACAACATCACGGTGGATAATGGATCATCTCAATTTCAACATCTATTTCCCGAGAATGATGACTTCTTACAGAATATGCAGAATTCTGAATCAGATATGGATAGAATTTTTAATGAGGTAGAGCAGGCGGCAGATTATTATTATCATGGTCAGCAAATGTCACTGAGCAGCCACAGCGAGAATGAAATCAACAATAACAACGTGAATTTGCCATCAAATCAGCAAGATAGCCATGTTCCTGCTGCTGTTTGTTATAACTATAATCTTTATGGAAACATTATTCAAAACAATGTTGCTGCACCTAATTATATTCAGCATCTTACCCCAAGGCAGATTTCTCCAGTCGAATACAACAACAACAACACTATTGATGATCTTGATTTGCAGGGACCATCATCATCTTGGTTCTATGGTGAGCCCTCTTCCCTTCCTAGCTTCTTCACTGACACAACAATTCAGGATAGTAATCAGCAGTATAAACCGACAATGAATCAGAGTGCACAGCATCTGACAAACACGCAACCACATAGTCATCCTAATAATAACCGCCTTCCATAA 1389 0.414 MTSVEGATRKNHGHRAELYAARVAKCLAALEGRDKVELVILPQSIVSENPPEQQNQQPPPPPPPPQNQEGDEQNEEEEQEDENDKENEQQQEQLLEEFIFDAEDGLITSSHTFTVMDSCDKMNGGAVNIVSGGGNKKGSDNGSCCNCQKSRCLQLYCECLRAGNLCNNSCTCKACENNENNRDKVYEKKKEIELRDPEAFQSKIIIGGNEAARHRKGCNCRKSKCKNKHCACFSAGVGCSNQCKCDDCMNEYGIVNNQQVHVLTNDSNNNGSNNNGSNNITVDNGSSQFQHLFPENDDFLQNMQNSESDMDRIFNEVEQAADYYYHGQQMSLSSHSENEINNNNVNLPSNQQDSHVPAAVCYNYNLYGNIIQNNVAAPNYIQHLTPRQISPVEYNNNNTIDDLDLQGPSSSWFYGEPSSLPSFFTDTTIQDSNQQYKPTMNQSAQHLTNTQPHSHPNNNRLP* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2443 462 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 179 IPR005172 -
Ahy18g2443 462 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 216 251 IPR005172 -
Ahy18g2443 462 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 64 428 - -
Ahy18g2443 462 ProSiteProfiles CRC domain profile. 141 253 IPR005172 -
Ahy18g2443 462 MobiDBLite consensus disorder prediction 70 87 - -
Ahy18g2443 462 Pfam AAA lid domain 12 37 IPR041628 -
Ahy18g2443 462 MobiDBLite consensus disorder prediction 440 462 - -
Ahy18g2443 462 MobiDBLite consensus disorder prediction 53 68 - -
Ahy18g2443 462 Gene3D - 4 42 - -
Ahy18g2443 462 Coils Coil 175 195 - -
Ahy18g2443 462 MobiDBLite consensus disorder prediction 47 90 - -
Ahy18g2443 462 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 64 428 IPR044522 GO:0003700
Ahy18g2443 462 SMART CXC_2 213 254 IPR033467 -
Ahy18g2443 462 SMART CXC_2 140 181 IPR033467 -
Ahy18g2443 462 MobiDBLite consensus disorder prediction 265 287 - -
Ahy18g2443 462 Coils Coil 69 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2443 Ahy-Chr18 125103740 125107349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2443 138 253 CPP Transcription Factor Family AT3G22760 43.511 1.92e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ahy18g2443 TCR 1.00E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2443 K21776 - ahf:112771246 806.594