Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2430 ATGCCAGGAAAACCCGAATCAGACGAATGGCGGGCGAAGCGAAGCCAGCAGATTCAGTTTCAAGCTTCCATTTATGCTCAGCCCTGGTGGCGCGGCGGAGCCGGTGAGAATGCTCCAAAATCATCATCAGTAGATCAGCAGTTGAATGGTTCATCAGCCATGAATGGTGGCACAGTCACAACACAATCAGAGACTAATGAAGTTGTTGGTTTCAATAAACAGATGCAGTCTTTGATTTCTCAATCACTACCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAGCACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGGAAAACACCTTGGTCCGAATTCCGAGACTGAAAGCATTGGTCATTCAATTGTTTTAACTTCACAAGCTTATTTTGATGCACATTATGGTGGAGGCTTGACACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCGGTTTATGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCATGAGTCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTTAATACAAAGAAGCTTGAAGGCAACAACAACAGTGTAAACCCCTCAATGGAATCCGGAAGCTCGCTTTCCGCGGCTCCTTTACATTCCAACAATGATCACTATGTTGTGTCGCAGTCCATGGTTCACGACATGGAGAAAATGCAGAATTTCACCATTGGTTTCCATGGTAGCAATGGTCTGTCCTCAATGTACCATTCACAGTTTAATGGAAGAAATGAGGGACATTGCTTTGGTGGAGAAAGGCAAGGCATGCTTATGCATGGAGCCCCAAATGGGGCTATTGAATGA 978 0.4468 MPGKPESDEWRAKRSQQIQFQASIYAQPWWRGGAGENAPKSSSVDQQLNGSSAMNGGTVTTQSETNEVVGFNKQMQSLISQSLPGIDNSGGDVTKEHQNIKHAFSSTPFTMGKHLGPNSETESIGHSIVLTSQAYFDAHYGGGLTPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNSVNPSMESGSSLSAAPLHSNNDHYVVSQSMVHDMEKMQNFTIGFHGSNGLSSMYHSQFNGRNEGHCFGGERQGMLMHGAPNGAIE* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2430 325 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 24 324 - -
Ahy18g2430 325 MobiDBLite consensus disorder prediction 232 256 - -
Ahy18g2430 325 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 324 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 MobiDBLite consensus disorder prediction 39 59 - -
Ahy18g2430 325 MobiDBLite consensus disorder prediction 227 256 - -
Ahy18g2430 325 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Ahy18g2430 325 Gene3D - 172 233 - -
Ahy18g2430 325 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Ahy18g2430 325 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2430 Ahy-Chr18 124758971 124764730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2430 21 255 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.024 1.91e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy18g2430 CBFB_NFYA 2.80E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2430 K08064 - gmx:100782085 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2430 18 124758971 124764730 Ahy18g2430 18 124758971 124764730 ECH