Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2308 ATGAACATGTTAGGCCTGAGAGACCTAGTTTTCATAGCACCAACCTATTCCCTTCACCATCATCACCAACAAGGCCAAACCATAATCTCACAAGACAACCACCATAGCCATGGCCATACCAACACCACCAACAACAACGACAATAACAATAACAATAACCTTCCTTTTCCTCCATCATCACTCAGCGTTGGCCTTGGAATCTTCCCCCTCATAACCGCCACACCCTGCATGCCACAAGATAACAATAACAACGTTCACCATGACCAACAACACCTTCTTGTTGGGACCAACACCACCACCACCACCAATAACAGTTACTGGAACCTCAAGATGTGTCCTGAAGTGTCAGAACACGACGGCGGCGGTGGTGATGGAAACAACAACGGAGACGGTGGTGGTGGTAGTATCTATGGCCCTGAATTCAGGGTGTGCCAGGATTGTGGCAACAGGGCAAAGAAAGATTGCAGTTACAAGAGGTGCAGGACTTGTTGCAAGGGGCGTGGATATGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGTGTCGCATCGCCGGGCACGTGATATGGCCGTTGTTGCTGCTAGTGATGGTGGTGGTGCTGCTGCTGCTCTTGGGGCTAATAAGAGGCTTAGAGCTTTTGGGTCATCACAAACAACTACAACTACTAATACCTCTCATAGTTCAACTTCTAATGCTACCACAACTAAGAGTTTGGATTCTACCTCTTGTCACCAGGATGCTGAATTCAAACAATCTTTACCGAGCCACGTTCGCGCCCCGGCGGCGTTTAGGTGCCACAGAGTGTCTGCTATTAGCAATGGCGAAGATGAAATTACATACTTGGCCACTGTCCACATTTGTGGCCATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGCTGATGGCAAGAATGATGAAGTTCCTTGTGTTTCAGTGTTGCAACTTGGAAACAGTGGGAAGAACAACAACAATGGGGAATGTTCCTCTCCAACTCCAATTGGGGTTCCAATTAGTGCCTACCCTGCTTCTGCTTGCTGA 1041 0.4822 MNMLGLRDLVFIAPTYSLHHHHQQGQTIISQDNHHSHGHTNTTNNNDNNNNNNLPFPPSSLSVGLGIFPLITATPCMPQDNNNNVHHDQQHLLVGTNTTTTTNNSYWNLKMCPEVSEHDGGGGDGNNNGDGGGGSIYGPEFRVCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDMAVVAASDGGGAAAALGANKRLRAFGSSQTTTTTNTSHSSTSNATTTKSLDSTSCHQDAEFKQSLPSHVRAPAAFRCHRVSAISNGEDEITYLATVHICGHVFKGFLYDQGADGKNDEVPCVSVLQLGNSGKNNNNGECSSPTPIGVPISAYPASAC* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2308 346 Pfam Domain of unknown function (DUF702) 143 302 - -
Ahy18g2308 346 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 346 - -
Ahy18g2308 346 MobiDBLite consensus disorder prediction 216 238 - -
Ahy18g2308 346 MobiDBLite consensus disorder prediction 22 57 - -
Ahy18g2308 346 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 143 185 IPR006510 -
Ahy18g2308 346 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 346 IPR007818 GO:0003700|GO:0006355
Ahy18g2308 346 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 254 300 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2308 Ahy-Chr18 121751252 121756887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2308 1 331 C2H2 Transcription Factor Family AT5G12330 36.000 4.48e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy18g2308 DUF702 1.30E-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2308 - - adu:107462849 569.696