Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2295 ATGGCGGTTGCTCTCTTGTTTCAATTGACATCATATTTCATTTTGCTCATTATACCAGGTCCAAAGGAGAGACTAATGAATCTGATGAATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGAACTCCAGATCCGAAATGGGCATCTACAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCGTTCATCGAAGCTTAGGAGTCCACATAACAAAGGTTCTATCGTTGAAGCTCGATGATTGGACAGATGAAGAAGTTGATACATTGCTCAATTTTGGTGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCACCTAACATTAAAAAACCGGACCCAAATTCATCAATTGAGGAACGCTCTGATTTTATAAGGCGAAAGTATGAGTTGTTGCAATTTACGGGTGGTGACAACAAATCACAACCTTGTCAAGCAAGTAATTCATCACCGGTTCAAAGTGATTCTCCTTCATTCAGTGATTCTCCGATGGACAAGAAGCAACACGAAAAACATAAACATCGAATTGGGAATGCATTGCGACATAATTGGGGAAAGAAAGATCACGAGAATAAAACTCCAAAGAAAACCAACTCATCATTGGCAGGTATGGTTGAATTTGTTGGATTAATTAAGGTTAATGTGGTAAAAGGCACTAACTTGGTTGTTCGAGATGTAGTGTCTAGTGACCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGCCTAATGTTGTCAATTCCAGAAAATATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAAACGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTGATAGCTACAAAAGAATATGAGGAGTCTAAAAGCTATGAGCATATGCAACAACATGGGGGATGTGGTTCAACCACAGAAAACACTTCCATTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTCTCAATTAGGTTACAAAATGTTGAGAGTGGTGTGTTAGAGATTGAGATTGAATGTGTTCCTCTTACTCAATAA 1110 0.382 MAVALLFQLTSYFILLIIPGPKERLMNLMNRSENKFCADCGTPDPKWASTSLGVFICIKCSGVHRSLGVHITKVLSLKLDDWTDEEVDTLLNFGGNTTLNKKYEACLPPNIKKPDPNSSIEERSDFIRRKYELLQFTGGDNKSQPCQASNSSPVQSDSPSFSDSPMDKKQHEKHKHRIGNALRHNWGKKDHENKTPKKTNSSLAGMVEFVGLIKVNVVKGTNLVVRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSNDDFMGEAEIDIEPLVIATKEYEESKSYEHMQQHGGCGSTTENTSICEDDANANHKGEMKQHFSIRLQNVESGVLEIEIECVPLTQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2295 369 PRINTS HIV Rev interacting protein signature 74 95 IPR001164 GO:0005096
Ahy18g2295 369 PRINTS HIV Rev interacting protein signature 53 70 IPR001164 GO:0005096
Ahy18g2295 369 PRINTS HIV Rev interacting protein signature 34 53 IPR001164 GO:0005096
Ahy18g2295 369 ProSiteProfiles C2 domain profile. 194 309 IPR000008 -
Ahy18g2295 369 Gene3D C2 domain 209 366 IPR035892 -
Ahy18g2295 369 ProSiteProfiles ARF GTPase-activating proteins domain profile. 22 144 IPR001164 GO:0005096
Ahy18g2295 369 MobiDBLite consensus disorder prediction 138 163 - -
Ahy18g2295 369 SUPERFAMILY ArfGap/RecO-like zinc finger 22 137 IPR037278 -
Ahy18g2295 369 MobiDBLite consensus disorder prediction 138 200 - -
Ahy18g2295 369 CDD ArfGap 25 131 - -
Ahy18g2295 369 MobiDBLite consensus disorder prediction 183 197 - -
Ahy18g2295 369 SMART C2_3c 212 307 IPR000008 -
Ahy18g2295 369 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 208 304 IPR035892 -
Ahy18g2295 369 Pfam Putative GTPase activating protein for Arf 23 137 IPR001164 GO:0005096
Ahy18g2295 369 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 20 369 - -
Ahy18g2295 369 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 20 369 IPR044518 GO:0005096|GO:0005543
Ahy18g2295 369 Pfam C2 domain 212 301 IPR000008 -
Ahy18g2295 369 Gene3D Arf GTPase activating protein 20 144 IPR038508 -
Ahy18g2295 369 SMART arf_gap_3 23 144 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2295 Ahy-Chr18 121431573 121443143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2295 19 369 C2H2 Transcription Factor Family AT4G21160 45.455 8.89e-105 310