Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2216 ATGGCGCTATGGATGGAAAATGGTTCAGAGCCACTCACCGAAGCCGAGAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCTGCAGCCATTGAACTCAAGGAAAAGGGTAACGAGTATGTGAAGAAGGGTAAGAAGCATTACTCCGAAGCAATTGATTGCTACACAAGGGCAATTAATCAGAAAGCATTGAATGATTCTGAGAGCTCTGTTCTTTTTGCGAACAGAGCGCATGTCAATTTGCTTCTTGGGAACCACCGGCGTGCCCTCTCTGATGCTCAACAAGCACTCAACTTGTCCCCCTCCAACATAAAGGCCATTTATAGAGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGACTATTGCCGAAAGGGTCTTAAGTTGGACCCCAATAATGAGGAACTTAAGAGGCTTGACCAACAGATTCGTATGAAGATATCTGAGAAGGAGAAGCTTGACGCTGAAGTCTCTAAAGCCATATTGGAGGCAGAAGAACTTGTGTCTGCAATAGAAAATAGAGGATTGAAGATTGGAAAGGCAATGTATCGAGAACTCACCGGGTTAAAGAAACCGGTGTTAAACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTGTATGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTCTGTGAGACTGACATGCTTTCAGTTCACCTTGATATCATGTTTTCAGCAGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGATTTTGTTGAATTATACTATGAGGCTGGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTAGAGGGAACTGCAGCTTCTCATGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACACACTGCAGGTTCCCCAAAATGGATCAAAGTAAATGAGAAGAAAACGCTCCAAGATATCCTCAAAGAGCCTAATTTCGTAATCCCCGAAATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1074 0.4227 MALWMENGSEPLTEAEKADLEAIAAIKESAAIELKEKGNEYVKKGKKHYSEAIDCYTRAINQKALNDSESSVLFANRAHVNLLLGNHRRALSDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDYCRKGLKLDPNNEELKRLDQQIRMKISEKEKLDAEVSKAILEAEELVSAIENRGLKIGKAMYRELTGLKKPVLNKNNILHWPVLLLYAEVMSSDFIEDFCETDMLSVHLDIMFSADQPLPWDVENNYKRDFVELYYEAGSGVRLSKEKLLHCLLEGTAASHVGDEEKDAVEDFKHTAGSPKWIKVNEKKTLQDILKEPNFVIPEIPVFYVVSKQSSFYSKFKSGKWAPPSI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2216 357 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Ahy18g2216 357 Gene3D Tetratricopeptide repeat domain 24 178 IPR011990 GO:0005515
Ahy18g2216 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Ahy18g2216 357 SMART tpr_5 105 138 IPR019734 GO:0005515
Ahy18g2216 357 SMART tpr_5 71 104 IPR019734 GO:0005515
Ahy18g2216 357 SMART tpr_5 31 66 IPR019734 GO:0005515
Ahy18g2216 357 Coils Coil 141 175 - -
Ahy18g2216 357 Pfam Cns1/TTC4 Wheel domain 202 267 IPR044059 GO:0051879
Ahy18g2216 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Ahy18g2216 357 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Ahy18g2216 357 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2216 Ahy-Chr18 118134198 118139238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2216 30 160 Calmodulin-binding Proteins AT3G25230 30.986 7.77e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2216 K24927 - gmx:100783179 560.836