Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2209 ATGTTAAAAAATGGAAAATCAAAATCACATGTATACACTTACAGCCCTACCAACTACAGAGTTCCAAATGCCATGTTCCTCTCCCACCGCCGCGATGCAGCGCTCCGCTTCACGTCCTCCGCCGCCACTACTGCTACCGACGCCGACATTGGGCCGCCAGGGGTTGTCTCCAGAGTTTCTTCCGTCACCGCCGGACCTAACTCTTCCTCCGCATCCCACTTGCTTCAAGCTTCTTCTTGGCCTGCTGCCATCGCCGCCGCTGCCGCTGCCGCAAATGGTGGCTCCCCCGCGCTCGACCTGAAACGCTCTTCTGAATTTGGGCAAAGCGAAGCTTGGTATTCTACAAACTCACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTTACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGACGGTGGAATACCAGATTGGAAAGAGATTTCAAACACTGTTTCGAGTGAAACACTTCCTGAGAGAATAGGAGAACCAGACTGTCCATACTTTATTAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAGTTTAATCATCCAAGATCTTCTGAAAATGGTGAAATTTCTGCCTTACCTGAGAGGCCATCAGAGCCCCTCTGTGCGTTCTATGTGAAGACTGGGAGATGTAAATTTGGTGCTACTTGTAGATTCCATCACCCGAAAGACATCCAGATTCTGACGTCTGATGAACTGAGTTATAATGCTGAACAAACACAAGAAAATTCCATAAGGGAGGGAGCAACAGGAGATACACAATCTTTCTTGTCTCCACTATTGCATAATAGCAAAGGACTTCCAGTAAGAATGGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCTACATGCCGCTACAACCATCCTGACAGGAATGCAATTTATCCGCCAGTTGCTACATTTGGTTCTTCTATGGTGACATCTATGGCTGCTAATCCAAGTATTGGATCTATAAATCCTTCTGTACCTATTTATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTATGTATCCTCAGCGTCCTGGACAGATTGAATGCGATTTCTATATGAAAACTGGTGAGTGCAAATTCGGGGAAAGATGCAAGTTCCATCACCCTCTTGACCGATCAGCAACATCAAGCATTAAGCTCACTCCCGCAGGATTACCTAGGAGAGAGGGTGTTAGCATCTGTCCGTATTACATGAAAACTGGCACTTGCAAGTTTGGTGCGACCTGTAAGTTTGACCACCCGCCACCCGGAGAAGTTATCGAGATAGCAAAATCGCAAGGAACATCCGCAACTGACGGAGGAGAAGCAGATTCATGA 1452 0.4614 MLKNGKSKSHVYTYSPTNYRVPNAMFLSHRRDAALRFTSSAATTATDADIGPPGVVSRVSSVTAGPNSSSASHLLQASSWPAAIAAAAAAANGGSPALDLKRSSEFGQSEAWYSTNSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEISNTVSSETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPRSSENGEISALPERPSEPLCAFYVKTGRCKFGATCRFHHPKDIQILTSDELSYNAEQTQENSIREGATGDTQSFLSPLLHNSKGLPVRMGEVDCPFYMKTGSCKYGATCRYNHPDRNAIYPPVATFGSSMVTSMAANPSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIMYPQRPGQIECDFYMKTGECKFGERCKFHHPLDRSATSSIKLTPAGLPRREGVSICPYYMKTGTCKFGATCKFDHPPPGEVIEIAKSQGTSATDGGEADS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2209 483 SMART c3hfinal6 388 415 IPR000571 GO:0046872
Ahy18g2209 483 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Ahy18g2209 483 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Ahy18g2209 483 SMART c3hfinal6 433 460 IPR000571 GO:0046872
Ahy18g2209 483 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Ahy18g2209 483 SMART c3hfinal6 228 255 IPR000571 GO:0046872
Ahy18g2209 483 Gene3D - 135 224 - -
Ahy18g2209 483 Gene3D - 387 474 - -
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 305 330 IPR036855 GO:0046872
Ahy18g2209 483 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 101 472 - -
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 389 416 IPR036855 GO:0046872
Ahy18g2209 483 Gene3D - 225 338 - -
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 436 460 IPR036855 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 193 216 IPR036855 GO:0046872
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 388 416 IPR000571 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 231 256 IPR036855 GO:0046872
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Ahy18g2209 483 SUPERFAMILY CCCH zinc finger 137 163 IPR036855 GO:0046872
Ahy18g2209 483 ProSiteProfiles Zinc finger C3H1-type profile. 433 461 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 255 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 215 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 328 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 414 IPR000571 GO:0046872
Ahy18g2209 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 460 IPR000571 GO:0046872
Ahy18g2209 483 PANTHER CCCH ZINC FINGER/TIS11-RELATED 101 472 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2209 Ahy-Chr18 117844865 117857464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2209 431 472 C2H2 Transcription Factor Family AT3G02830 48.837 8.37e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy18g2209 zf-CCCH 2.30E-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2209 - - gmx:100801417 672.544