Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2115 ATGCCCCTCCACCCTCATTACTTCCCTTCTTCCTCCTCCTCCTCTTCTTCTTCTTTCATTTCTAATCAAAATTCCATTAATAGTTCCCTCTTCTCATCACCATCGTATCCTCTCTATTTCTCAAACACCAGATTATTCTCCGTCCAATTGGAACCACCCTCTTCATCATCTTCTTCTTCCGTGGCAGCACTGCCTCCTCCTCCTTCTTCCCCTCCTCTCATAGAAGCCCTTCCTTTCATAAACACTATAAGCCTCAAAAACCATAGCAACAACAATAGCAGTGATCAAGAAGTAGTGGTGGACAAGAAGAGAAAAGACAACAACAAAAAAGATCAAGAGAATCTTTTGGCTGATGATGATTATGATGATAACGAAGGTGTTGCCGTAGCGCTACGAATAGGGCTTCCTAATAGCGTGTCTGATAATACTTCCGGTATTGATGATCGGCAAAAGAAGAAGAAGATCTCATCAAACTCAGAAGAAATTGTGGGAGAAAAAGATGAAGTGATGAGCGTGGTTTCTGAGCATCACCCTTCGTTGTTAGAGAGATTTAACAATAACAAGACACAGTTTCAGTATTGGATTCCCACAGCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCAGTCTGCTCCAAGACTTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCGCCAGGTTGCAAGCACAACATAGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACCCTCCAAACGCATTACAAGCGAAAGCACGGTGTAAAACCCTACGCTTGCCGGAAATGTGGCAAGCCGTTTGCCGTGAAAGGCGATTGGCGGACGCATGAGAAGAACTGCGGCAAGATCTGGTATTGTTTGTGTGGGTCTGATTTCAAGCATAAGAGGTCCCTGAAGGATCATGTCAAAGCCTTTGGCCATGGACATGGTGCTTTTGGTATTGATTGCATGCAAGAGGAGGATGAAGCAGCTTCCGAAGTTGAACATGATGGTGATTGCTCCTTGTAG 1110 0.4468 MPLHPHYFPSSSSSSSSSFISNQNSINSSLFSSPSYPLYFSNTRLFSVQLEPPSSSSSSSVAALPPPPSSPPLIEALPFINTISLKNHSNNNSSDQEVVVDKKRKDNNKKDQENLLADDDYDDNEGVAVALRIGLPNSVSDNTSGIDDRQKKKKISSNSEEIVGEKDEVMSVVSEHHPSLLERFNNNKTQFQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKPFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGHGHGAFGIDCMQEEDEAASEVEHDGDCSL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2115 369 MobiDBLite consensus disorder prediction 97 116 - -
Ahy18g2115 369 Gene3D Classic Zinc Finger 261 343 - -
Ahy18g2115 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Ahy18g2115 369 Gene3D Classic Zinc Finger 207 230 - -
Ahy18g2115 369 SMART c2h2final6 208 230 IPR013087 -
Ahy18g2115 369 SMART c2h2final6 292 312 IPR013087 -
Ahy18g2115 369 SMART c2h2final6 318 341 IPR013087 -
Ahy18g2115 369 MobiDBLite consensus disorder prediction 139 160 - -
Ahy18g2115 369 MobiDBLite consensus disorder prediction 145 160 - -
Ahy18g2115 369 MobiDBLite consensus disorder prediction 86 116 - -
Ahy18g2115 369 PANTHER ZINC FINGER PROTEIN WIP2 17 363 - -
Ahy18g2115 369 SUPERFAMILY beta-beta-alpha zinc fingers 201 230 IPR036236 -
Ahy18g2115 369 SUPERFAMILY beta-beta-alpha zinc fingers 277 312 IPR036236 -
Ahy18g2115 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 312 IPR013087 -
Ahy18g2115 369 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Ahy18g2115 369 PANTHER ZINC FINGER PROTEIN WIP2 17 363 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2115 Ahy-Chr18 113407849 113411894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2115 127 362 C2H2 Transcription Factor Family AT3G57670 64.567 2.95e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g2115 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2115 - - ahf:112707475 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2115 18 113407849 113411894 Ahy8g2039 8 40656099 40660965 hybridization