Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy18g2110 | ATGTCCACAAGGATTTGCAAGTTTTATGCCCGAGGAGCATGTTTGAAAGGGGAGCAATGTGATTTTTATCATGAGAGAAAAGATACAGATGTTTCTGGACAGCAGATTTGCACATTCCATCAAAAAGGACTCTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAACGTTTCTCAAGCATCATCTTCAGCAAATGGATGCCAATCTGTTGTTTTGGATTCTGCTGCAGCTCATACTATTCAAGGAGCTTCGTCAAGTTGGGTTCCAAAAGCCACAAAGATATCTCCGTCTGACAAGCATGCAAGGCGTTCACTACATAAGCATCAGGACTATCTAGGGAATGGTGATGTTAGTGAATCAAGTACTAGTAGTGCGATACCATCTGAGCATCTTCTTTGTACATTTGCTGCTGCAAACTGCCCTCTAGGAGATAAATGTTCTCGTGTTCATGGAAATCAATGTTTATACTGTAGAAAATATTGCTTGCATCCCACTGATAGAAGGGTAAAAGACAATCATTTGCGGACTTGCGAGAAAAAGGAAAAATACCTACAGAGTTTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTCTTGAGCGTGTTCTATCGAAACCTAAGCCGGCTGAATGTAAGTTTGGGTTGCTTCCAGAATGCGACCATGCTTTTTGTATATCCTGTATCCGTAACTGGCGTAGTAGTGCCCCAACCTCTGGAATGGACTTTAATAATACTACTAATACAGTGAGAACCTGCCCTGTGTGCCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACAAAGGAAGAGAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAAGTTAATTGATTGTAAACATTTTAACTTTGGAGATGGAAACTGTCCATTTGGGACCAGTTGTTTCTACAAGCACACTGTGAAACCTGGTTCATACACATGGATTCATAAGAGGCCACCACCTAGACGAAGACCGAACAATCTTGATATGTATGATGTATTGGATATGCTGGGTGATGTTGATTTATCAGGTGGAGAATTATATTCCATCATGAGGGACAATGACATGTTTGATGAGATGGATCCCTATGAAATGATGGCTATCTCAGACATGCTGGTCACTGGACCAGGTCCTTGCCCTTTTGATTCCGAGGAAGATGATGACGTGGATTTCATTCGGATGACTTCCTTGGCTGAAGCATTGGCTTCTGGTGTCGATGACTTTGGCCCGGATGATTTTAGAAATGATGCATTGGATCCAATGGAGGCAGCATTATTTTCAATGATGATGCATTCTAATATTGAAGAAGACGAGGAAGACAGTGATGATGAAATTTATTAG | 1362 | 0.406 | MSTRICKFYARGACLKGEQCDFYHERKDTDVSGQQICTFHQKGLCAYGSRCRYKHVNVSQASSSANGCQSVVLDSAAAHTIQGASSSWVPKATKISPSDKHARRSLHKHQDYLGNGDVSESSTSSAIPSEHLLCTFAAANCPLGDKCSRVHGNQCLYCRKYCLHPTDRRVKDNHLRTCEKKEKYLQSLKDSQEIECNVCLERVLSKPKPAECKFGLLPECDHAFCISCIRNWRSSAPTSGMDFNNTTNTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGDGNCPFGTSCFYKHTVKPGSYTWIHKRPPPRRRPNNLDMYDVLDMLGDVDLSGGELYSIMRDNDMFDEMDPYEMMAISDMLVTGPGPCPFDSEEDDDVDFIRMTSLAEALASGVDDFGPDDFRNDALDPMEAALFSMMMHSNIEEDEEDSDDEIY* | 454 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy18g2110 | 453 | CDD | RING-HC_MKRN | 196 | 257 | - | - | |
Ahy18g2110 | 453 | SUPERFAMILY | RING/U-box | 184 | 263 | - | - | |
Ahy18g2110 | 453 | ProSitePatterns | Zinc finger RING-type signature. | 220 | 229 | IPR017907 | - | |
Ahy18g2110 | 453 | ProSiteProfiles | Zinc finger C3H1-type profile. | 286 | 315 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 288 | IPR013083 | - | |
Ahy18g2110 | 453 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 257 | IPR001841 | - | |
Ahy18g2110 | 453 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | Pfam | CCCH-type zinc finger | 36 | 55 | IPR041367 | - | |
Ahy18g2110 | 453 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | SMART | c3hfinal6 | 129 | 153 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | SMART | c3hfinal6 | 286 | 314 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | SMART | c3hfinal6 | 32 | 57 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | PANTHER | MAKORIN-RELATED | 1 | 451 | IPR045072 | - | |
Ahy18g2110 | 453 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
Ahy18g2110 | 453 | Pfam | Zinc finger, C3HC4 type (RING finger) | 196 | 256 | IPR018957 | GO:0046872 | |
Ahy18g2110 | 453 | SMART | ring_2 | 196 | 256 | IPR001841 | - | |
Ahy18g2110 | 453 | ProSiteProfiles | Zinc finger C3H1-type profile. | 32 | 58 | IPR000571 | GO:0046872 | |
Ahy18g2110 | 453 | Pfam | RNA-binding, Nab2-type zinc finger | 134 | 152 | - | - | |
Ahy18g2110 | 453 | Pfam | RNA-binding, Nab2-type zinc finger | 291 | 312 | - | - | |
Ahy18g2110 | 453 | Pfam | RNA-binding, Nab2-type zinc finger | 5 | 24 | - | - | |
Ahy18g2110 | 453 | Gene3D | - | 1 | 71 | - | - | |
Ahy18g2110 | 453 | MobiDBLite | consensus disorder prediction | 92 | 124 | - | - | |
Ahy18g2110 | 453 | MobiDBLite | consensus disorder prediction | 96 | 114 | - | - | |
Ahy18g2110 | 453 | PANTHER | MAKORIN RING-ZINC-FINGER PROTEIN | 1 | 451 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy18g2110 | Ahy-Chr18 | 112594218 | 112599992 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Ahy18g2110 | zf-C3HC4 | 6.20E-07 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy18g2110 | K15687 | - | gmx:100788886 | 678.322 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy18g2110 | 18 | 112594218 | 112599992 | Ahy8g2035 | 8 | 40581143 | 40586882 | hybridization |