Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2050 ATGCCAGCTTTGATGTCAGCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGGGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTCATTGTATGAGCCAAGTGGAACCACCAAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAAGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGAGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGCGTTTGCGATTGTTGAGAGGAAGAAACAACAAATTGAGGCTGCCCCATTTGCAGCGAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGATTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTATACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAATGTTTCCAAGAGTGACAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAGTGGAGAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACAGAACCAGGCAGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTATTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCAGCTTGATACTGTCTCGCCTTTGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGGAACACTATTATTGTGTAGCGAGGTTACAGCACAAGGTCGATACCATGCGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCAGGAACAACAGTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGGGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTAACCATATGTGAAGAGTCCGAAGTTTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1716 0.4598 MPALMSARFLLLVGESFPIRRALATHKNASSLLHTSIHCMSQVEPPNHGSLTLSSVGFQSEVDKPINKGGKSSSKVKPLLSSSPGSLKSKGIGKPIGSSEKKKAFAIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNNVSKSDSGGDSGGKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVVQQLVGGANRTRQEEALKKNKPAIIVGTPGRIAELSAAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIQLDTVSPLGPINLSRPSVGSTPDPTKPSQASVESLPPALEHYYCVARLQHKVDTMRKCIHALDAKVVIAFRNNSKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2050 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 547 - -
Ahy18g2050 571 MobiDBLite consensus disorder prediction 64 97 - -
Ahy18g2050 571 CDD SF2_C_DEAD 399 528 - -
Ahy18g2050 571 Gene3D - 96 356 IPR027417 -
Ahy18g2050 571 CDD DEADc 134 355 - -
Ahy18g2050 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Ahy18g2050 571 Pfam DEAD/DEAH box helicase 147 340 IPR011545 GO:0003676|GO:0005524
Ahy18g2050 571 MobiDBLite consensus disorder prediction 373 392 - -
Ahy18g2050 571 SMART helicmild6 438 519 IPR001650 -
Ahy18g2050 571 Gene3D - 396 552 IPR027417 -
Ahy18g2050 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 547 - -
Ahy18g2050 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 541 IPR027417 -
Ahy18g2050 571 Pfam Helicase conserved C-terminal domain 418 519 IPR001650 -
Ahy18g2050 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 558 IPR001650 -
Ahy18g2050 571 SMART ultradead3 142 374 IPR014001 -
Ahy18g2050 571 MobiDBLite consensus disorder prediction 74 88 - -
Ahy18g2050 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 354 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2050 Ahy-Chr18 109432344 109439957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2050 124 547 Eukaryotic Initiation Factors Gene Family AT3G19760 24.292 3.18e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2050 - - aip:107613119 1043.88