Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1992 ATGGAGCTTGGATTAAGCTTAGGAGACTCTTCAAGGCCTTTTGTTGGGTTCATGGAAAAGCCTCGTAGTGAAACTTCTTCCAACCAACTTGGATTAGGCTTCACCACCACCACCTTGTCCATTGGACCAATCATCACTACTAAAGGACAAAGGGATCAACAACAAGAACAACAACCACAACAACAGGAACATGAAGATAAAGAAGAAGCAAAATCAAAGGACAACAACAACAACAACCACCCTCATCTTCATCAGCTTGATTTCCTTCCTCAGCTCTCTCTCCCATGGCATCCTTCTGAAAACGGTAGAGTGTCAAAAGGTTTGGACGTAAACGTGCTGCCGCTGACAACCGTGGCGGCGACGGCGGCGGCGGGGGCAGATGATGAGGTTGAGGAAGGGGAGGCGCTGTCATCGTCCCCGAATAGCGCAGCGTCTTCCTTTCAGACGGATCTATGCATATTTGGTGGTGGTGGTGGAAGCGGTGGCGGCGGTGGTAGTTACAGCGGTGGTTCGGGAGGAAACTATTACAACTACGGTGGAAAAAGAGATCACTCTGATGGCGAGGGTTATGATCACCAAAGGGATTCTTCAAGAGCAAGCGACGAAGATGAAAACTGCGGCCGTGGCGGCGGCACAAGGAAGAAACTCAGACTCTCCAAGGAACAATCCGCTTACCTTGAGGAGAGCTTCAAAGAGCACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGGCCTCGCCAAGTTGAAGTCTGGTTTCAAAACAGAAGAGCAAGGACAAAGCTGAAGCAAACTGAGGTGGATTGTGAGTATTTGAAGAGGTGCTGTGAGACACTAACAGAAGAGAACAGAAAGCTTCACAAGGAGCTTCAAGAATTGAGGGCTCTAAAGACTTCAAACCCATTCTACATGCAGTTACCGGCAACAACGTTGACCATGTGCCCTTCTTGTGAGCGTGTTGCTACAAATCCTTCTTCAAATAATTCTGCCTCACCAACTCCTCCTTCTAATAATAATTCTAACAATAATAATATTATTAATAGTAATAATGACTCAAATTCAAAGGTCATTGGATTCCCTCTTGGGAAACACACGTTTCATCCTTTTGCTCACACCACACAACAGCAACAACATCATCCACATCAGTCCACAGCATCGTGA 1179 0.4623 MELGLSLGDSSRPFVGFMEKPRSETSSNQLGLGFTTTTLSIGPIITTKGQRDQQQEQQPQQQEHEDKEEAKSKDNNNNNHPHLHQLDFLPQLSLPWHPSENGRVSKGLDVNVLPLTTVAATAAAGADDEVEEGEALSSSPNSAASSFQTDLCIFGGGGGSGGGGGSYSGGSGGNYYNYGGKRDHSDGEGYDHQRDSSRASDEDENCGRGGGTRKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNPSSNNSASPTPPSNNNSNNNNIINSNNDSNSKVIGFPLGKHTFHPFAHTTQQQQHHPHQSTAS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1992 392 Pfam Homeodomain 213 267 IPR001356 GO:0003677
Ahy18g1992 392 MobiDBLite consensus disorder prediction 1 84 - -
Ahy18g1992 392 SMART HOX_1 211 273 IPR001356 GO:0003677
Ahy18g1992 392 MobiDBLite consensus disorder prediction 21 57 - -
Ahy18g1992 392 MobiDBLite consensus disorder prediction 58 80 - -
Ahy18g1992 392 Gene3D - 217 267 - -
Ahy18g1992 392 CDD homeodomain 213 270 IPR001356 GO:0003677
Ahy18g1992 392 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
Ahy18g1992 392 MobiDBLite consensus disorder prediction 184 218 - -
Ahy18g1992 392 SMART halz 269 312 IPR003106 GO:0006355|GO:0043565
Ahy18g1992 392 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 355 - -
Ahy18g1992 392 Coils Coil 282 305 - -
Ahy18g1992 392 Pfam Homeobox associated leucine zipper 269 303 IPR003106 GO:0006355|GO:0043565
Ahy18g1992 392 SUPERFAMILY Homeodomain-like 200 270 IPR009057 -
Ahy18g1992 392 MobiDBLite consensus disorder prediction 327 362 - -
Ahy18g1992 392 MobiDBLite consensus disorder prediction 327 372 - -
Ahy18g1992 392 PANTHER - 1 355 - -
Ahy18g1992 392 ProSiteProfiles 'Homeobox' domain profile. 209 269 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1992 Ahy-Chr18 105478419 105482093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1992 197 326 Homeobox Transcription Factor Family AT4G37790 74.615 5.71e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy18g1992 Homeodomain 2.60E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1992 K09338 - gmx:100778742 384.8