Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy18g1960 | ATGACTATACCATCGGCACCGCCGCCCTTTGCCCTAACTGTGCTCTGCGCCGGCTGCAGCACGCCACTGACCACGTCGATGAACGTCGTGGAGTTTGTTTGCCCTGCTTGCCAAATGCCGCAGCGGTTGCCGCCGATGCCATTACCACCACTTCCACCACCATCAGTATCACCGCCACAATCGCAACCACCAGTGCCGCCGGCTGGAGCGGCTGCGAAGAAGCGGAAACACGCCACGGAGACTAGCAAGCTACGCAAGAAGCAGAATGGCGGCTCTGGTTCAAGTAAGGTTGAGGTTCCATGCAGAGGCTGCAAAGGGGTTTTTTCCGTTCCAGCTAGTCTCACGAAGTTCGCTTGCCCTAAGTGTGGTGTTGAGAACCCCGTCGAGACCGAAGAAATCAACGAGCTAGCGGTTGAGGTTGAACGTGATGAAGATGAAGGCGGAACAGCAGGAGAAACATTTACAGATTATCGGCCAGCAAAAGTATCTATGGGACCTCCGCACCCAGATCCTGTTGTTGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCTGAACCTACTTATGATCCAATACTTAAAGATTATTTGGAAAGTTCAAAGGCTTTGTCATGCCTGCAGATAGAGACATTGGTCTATGCTTGTCAGAGGCATCTTCTACACCTTCCAGACGGCACAAGGGCAGGATTTTTTATTGGGGATGGAGCTGGTGTTGGTAAGGGCCGCTCAGTTGCTGGGCTTATTTGGGAGAACTGGCAGCAAGGACGGGAAAAGGCGTTATGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATATGGGTGCAACTTGTGTTAAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTTCTTCGAAGTCTGTTGGAGTCAAGGATGGGGTTGTTTTCTCAACTTACAGTAGCCTCATAGCATCCTCTGATAAGGGTCAATCTCGTCTCAAACAACTTGTGCAGTGGTGTGGGCCAAAGTTTGATGGTCTTATAATATTCGATGAGTGTCACAAAGCGAAAAACTTGATGCCGGAAGCTAAAGGTGGTATGCAGCCAACACAAACTGGCAAAGCAGTGCTTGATATACAGGCTCAACTACCCGAAGCTCGTGTTGTTTATTGTTCTGCCACTGGTGCATCTGAACCCCGCAACATGGCTTATATGGTTCGACTTGGCCTTTGGGGTGATGGAACTTCTTTCTGTGATTTCAAGGAATTTTTAGGTGCACTTGACAAAGGGGGTGTAGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGAATGTATTTATGTCGGACCCTTAGCTACAAGGGTGCTGACTTTGAAGTTATTGAAGCACCATTAGAGGATAAGATGATGGACATATATGAAAAAGCTGCAAAATTTTGGTCGGAACTGCGCGTGGATTTACTGTCTACAACTTCCAATGCCTTCTTAAATGTGAAATTTGATTCACGTACACTGTGGAGATTATACTGGTCATGCCACCAGCGTTTCTTTAGACACGTGTGTTTGTCTGCTAAAGTACCTGCTACTGTGAGACTAGTGAAGCAAGCATTGATGGAAGATAAGTGTGTAGTTATAGGACTGCAGAGTACTGGGGAAGCCAGGACTGAAGGAGCTGTGGCAAAATACGGTTTTGAACTTGATGATTTCATTTCTGGGCCTCAAGAGTTGCTGGAAAAATTTGTAGATGACTGTTTTCCATTGCCAGAGAACCCCGAACTTCATGAAAAGGATGCATTGCTTGATCTCGAGGGGATGGGGCACTCAACGAGTCCTTGTGTATCAGGAAAAGTAAAGGGCAGGAACATAGCTAAGGTGCATCCTTCTAGTAATATTGAAAGTTACGAAGAATCTGAAACTGACACTGATCCTGAAATGGATGAATCTGATTATGAACCAGAAGGTGAAGAGAGTGCTGCCTCTGCTCTTGAATCGTTTGAAAGGCATAATTTGCTTTCATGCTCTGGCTGTGGTAAACTGGTCCATCAAGAATGCTTAAGTCCCCCAATTCACAATTTAACTCCAGAAAAATGGTTATGCACTGTGTGCAAAGGAAGAACAAATGACATCCAACCAGGTCCTGGCTACCTAACTGAACTCAAGAAGAGGTATGATGCAGCTTTGGACCACAAGACAAAACTGTTAGAGACTATTCGTAAATTAGATCTTCCGATCAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCACTGAAAAAGTTGCTGAAATCACAGGAAGAAAAGGCAGGCTTGTGAGGGCCCCTTCGGGAAAGGGTGTAATTTACGAGCCTCGTAACAAAAAAGATATCAGTATGGAGATGGTAAACATGCATGAAAAGAAGCTTTTTCTGGATGCTAAGAAGTTTGTTGCTATTATATCTGAAGCCGGATCTGCGGGTTTTTCATTGCATGCAGATAGAAGGGTTATTAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCTTGGAGTGCTGACAAAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAAGCAAGCTTCAGCTCCAGAATACAGGGTGCTCTTTAGTAACCTTGGTGGTGAACGAAGCTTTGCATCTGTTGTTGCTAAAAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGATCGCAGGGCTGGACCTTCATTAAGTGCTTACAATTATGATAGTAGTTATGGAAAGAGGGCTCTAATGATTATGTACGAAGGAATATTGGAACAGGATTCTCTTCCTGTTGTTCCTCCTGGATGTTTATCTGACAATCCTGTTACAATCAATGAATTTATTATGGAAGCAAAAGCTGCTCTTCTATCTGTTGGAATAGTTAAAGGATATGAGGAACATTCTGGAAGTTTATCTGGCTACATTAGTGATAATGATATGCAAGATGTTCGGCGATTCCTCAATCGGCTTCTAGGACTTCCTCCTGATATTCAGAATAGGCTTTTTGAATTATTTGCGAGCATATTTGATCATCTCATTCAGAATGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTGGATATGAAGGCTAATGTTGTAGAACTACAAGGGACTCCAAAGACAGTTTATATTGATCCAGTGATGGGGGCTTCAACGGTTCTGTTCACTTTCATCTTGGATAGGGGGACCACATGGCAGCTGGCAACCTCCATGCTGAATGAGAAGCAGAAGGGTGGGCTTGGATCAGTCAATGATGGTTTCTACGAGTCTAAGAGGGAGTGGTTAGGAAGGCGTCATTTCATTTTAGCATTTGAAAGTTCTGTTTCGAATATGTATAAGATAGTTCGCCCTACTGTTGGAGAATCCTTTCGGGACATGCATCTGTCAGAATTAAAAAGGAAATATAAAAAAGTTTCATGTTTAAAGAATGCTCAAAAAGGATGGGAAGTGGAATATAATGTTTCATCTAAACAGTGCATGCACGGTCCCAAATGTAAGCTTGGCAACTTCTGTACTGTTGGCCGAAGTCGGCAGGAAGTAAATATCTTGGGTGGTGCTATTCTTCCTCTTTGGCGAGCTATTGAGAAGGCCCTTTCTTTGCAGTTTCGCCGAAACCATAGGAGGCTACGTGTTGTTCGCATTGAGACTTCTGCTGATAACCAGCATATAGTTGGCGTTCTTGTTCCTAATGCAGCTGTTAAATCCGTCCTTCAAGGTTTGGAATGGGTTCCAGCTGATGATAATTGA | 3741 | 0.4432 | MTIPSAPPPFALTVLCAGCSTPLTTSMNVVEFVCPACQMPQRLPPMPLPPLPPPSVSPPQSQPPVPPAGAAAKKRKHATETSKLRKKQNGGSGSSKVEVPCRGCKGVFSVPASLTKFACPKCGVENPVETEEINELAVEVERDEDEGGTAGETFTDYRPAKVSMGPPHPDPVVETSSLSAVQPPEPTYDPILKDYLESSKALSCLQIETLVYACQRHLLHLPDGTRAGFFIGDGAGVGKGRSVAGLIWENWQQGREKALWISVGSDLKFDARRDLDDMGATCVKVHALNKLPYSKLSSKSVGVKDGVVFSTYSSLIASSDKGQSRLKQLVQWCGPKFDGLIIFDECHKAKNLMPEAKGGMQPTQTGKAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTSFCDFKEFLGALDKGGVGALELVAMDMKARGMYLCRTLSYKGADFEVIEAPLEDKMMDIYEKAAKFWSELRVDLLSTTSNAFLNVKFDSRTLWRLYWSCHQRFFRHVCLSAKVPATVRLVKQALMEDKCVVIGLQSTGEARTEGAVAKYGFELDDFISGPQELLEKFVDDCFPLPENPELHEKDALLDLEGMGHSTSPCVSGKVKGRNIAKVHPSSNIESYEESETDTDPEMDESDYEPEGEESAASALESFERHNLLSCSGCGKLVHQECLSPPIHNLTPEKWLCTVCKGRTNDIQPGPGYLTELKKRYDAALDHKTKLLETIRKLDLPINPLDDIIDQLGGTEKVAEITGRKGRLVRAPSGKGVIYEPRNKKDISMEMVNMHEKKLFLDAKKFVAIISEAGSAGFSLHADRRVINQKRRVHITLELPWSADKAIQQFGRTHRSKQASAPEYRVLFSNLGGERSFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSSYGKRALMIMYEGILEQDSLPVVPPGCLSDNPVTINEFIMEAKAALLSVGIVKGYEEHSGSLSGYISDNDMQDVRRFLNRLLGLPPDIQNRLFELFASIFDHLIQNARIEGNLDTGIVDMKANVVELQGTPKTVYIDPVMGASTVLFTFILDRGTTWQLATSMLNEKQKGGLGSVNDGFYESKREWLGRRHFILAFESSVSNMYKIVRPTVGESFRDMHLSELKRKYKKVSCLKNAQKGWEVEYNVSSKQCMHGPKCKLGNFCTVGRSRQEVNILGGAILPLWRAIEKALSLQFRRNHRRLRVVRIETSADNQHIVGVLVPNAAVKSVLQGLEWVPADDN* | 1247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy18g1960 | 1246 | PANTHER | OS08G0223700 PROTEIN | 9 | 129 | - | - | |
| Ahy18g1960 | 1246 | Pfam | P-loop containing NTP hydrolase pore-1 | 167 | 469 | IPR039187 | - | |
| Ahy18g1960 | 1246 | MobiDBLite | consensus disorder prediction | 620 | 656 | - | - | |
| Ahy18g1960 | 1246 | Gene3D | - | 196 | 400 | IPR027417 | - | |
| Ahy18g1960 | 1246 | CDD | PHD_SF | 665 | 697 | - | - | |
| Ahy18g1960 | 1246 | SMART | PHD_3 | 606 | 698 | IPR001965 | - | |
| Ahy18g1960 | 1246 | PANTHER | OS08G0223700 PROTEIN | 129 | 1242 | - | - | |
| Ahy18g1960 | 1246 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 180 | 412 | IPR027417 | - | |
| Ahy18g1960 | 1246 | MobiDBLite | consensus disorder prediction | 140 | 162 | - | - | |
| Ahy18g1960 | 1246 | Pfam | PHD-finger | 661 | 698 | IPR019787 | - | |
| Ahy18g1960 | 1246 | MobiDBLite | consensus disorder prediction | 48 | 97 | - | - | |
| Ahy18g1960 | 1246 | Pfam | C-terminal domain on Strawberry notch homologue | 740 | 1025 | IPR026937 | - | |
| Ahy18g1960 | 1246 | MobiDBLite | consensus disorder prediction | 630 | 651 | - | - | |
| Ahy18g1960 | 1246 | MobiDBLite | consensus disorder prediction | 48 | 66 | - | - | |
| Ahy18g1960 | 1246 | PANTHER | STRAWBERRY NOTCH-RELATED | 129 | 1242 | IPR026741 | GO:0006355 | |
| Ahy18g1960 | 1246 | PANTHER | STRAWBERRY NOTCH-RELATED | 9 | 129 | IPR026741 | GO:0006355 | |
| Ahy18g1960 | 1246 | SUPERFAMILY | FYVE/PHD zinc finger | 663 | 703 | IPR011011 | - | |
| Ahy18g1960 | 1246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 615 | 703 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy18g1960 | Ahy-Chr18 | 101986364 | 102005857 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Ahy18g1960 | AAA_34 | 2.90E-131 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy18g1960 | - | - | ahf:112702977 | 2341.23 |