Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1945 ATGATCCAACAGCGTGGGACCCATTTTGTATTATGTCACTTAACAAAGGTTACCATTTATAAATGGAGTGCCTCCAAATTCAAAAGCTGGTATCAATTCACTCTTGAGAGCATTATTAGTGCTGGTTTTGGAAGAGAGAGAGAAAGAGAAATGGGGCATCGTTGCTGCACCAAACAGAAGATCAAAAGAGGGTTGTGGTCTCCTGAAGAAGATGAGAAGCTTCTCAGATATATCACAACTCATGGCCACAAAAGTTGGAGTTCTGTCCCTAAATTTGCAGGATTGCAAAGATGCGGAAAGAGTTGCAGATTGAGATGGATAAATTACCTGAGGCCAGATCTGAAGAGGGGCTCCTTCACTTTAGAGGAAGAGCAGATCATAATTGACATTCATAGAATTCTCGGAAACAGATGGGCTCAAATAGCGAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATATCTCAAGGCCTAGATCCACAAACACACACTCTTCTCTCTTCTCACAGGAGAACAACCTCATCATCATCAAACTTCTCTAACAATAATAATGATTCCTTTCTCATTATTACTTCAAATATGCCAAACAGTGCTAATAATAATGCTCCCATTATTGAAACTAGCCAAGGCCTTTCTTCTTCTTCTTCTTCACTACCTACCAATAATCAGGCTCAACCAAGTGTTGTTCAAGCACCGTCTAGCATTGTTACCTCATCGGATTTTTATTATGAACCATCAATAATAATAGAGAATAATAATAGTACTAATAGTAATGTCTCCAATAGTATCCCATCTAAGAATAGCTTATTATGGAGTTCAAGGACTGATCATGATGCTGAAGATTTCAGAGTTCAGACATTGGAAGAAGGGCAAGGAATGCAACATTCACTACATGCTGCTGATGATGATGATAACGAGATCAGAGAAGCTAATAATATCATTGAGATGAATACTAATGCTTCTTTGGAGGGCTCCAATAATGATAATAATAATAATAATTTTGACTTTGGGTTGCTGGAAAGTGTACTTAACTCTGAATTCATGTCTCATGATATCAACTATATGGATGAACTTGCATGGAACTTTTAG 1125 0.3796 MIQQRGTHFVLCHLTKVTIYKWSASKFKSWYQFTLESIISAGFGREREREMGHRCCTKQKIKRGLWSPEEDEKLLRYITTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTLEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRTTSSSSNFSNNNNDSFLIITSNMPNSANNNAPIIETSQGLSSSSSSLPTNNQAQPSVVQAPSSIVTSSDFYYEPSIIIENNNSTNSNVSNSIPSKNSLLWSSRTDHDAEDFRVQTLEEGQGMQHSLHAADDDDNEIREANNIIEMNTNASLEGSNNDNNNNNFDFGLLESVLNSEFMSHDINYMDELAWNF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1945 374 SUPERFAMILY Homeodomain-like 60 157 IPR009057 -
Ahy18g1945 374 Gene3D - 118 165 - -
Ahy18g1945 374 CDD SANT 66 110 IPR001005 -
Ahy18g1945 374 Gene3D - 63 115 - -
Ahy18g1945 374 PANTHER BNAC05G40480D PROTEIN 51 362 - -
Ahy18g1945 374 CDD SANT 118 158 IPR001005 -
Ahy18g1945 374 PANTHER MYB DOMAIN PROTEIN 55 51 362 - -
Ahy18g1945 374 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Ahy18g1945 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 110 IPR017930 -
Ahy18g1945 374 MobiDBLite consensus disorder prediction 212 243 - -
Ahy18g1945 374 SMART sant 115 163 IPR001005 -
Ahy18g1945 374 SMART sant 62 112 IPR001005 -
Ahy18g1945 374 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Ahy18g1945 374 Pfam Myb-like DNA-binding domain 116 159 IPR001005 -
Ahy18g1945 374 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Ahy18g1945 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1945 Ahy-Chr18 100599051 100601847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1945 47 183 MYB Transcription Factor Family AT3G12720 86.131 1.14e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy18g1945 Myb_DNA-binding 1.50E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1945 K09422 - gmx:100791209 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1945 18 100599051 100601847 Ahy18g1945 18 100599051 100601847 ECH