Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1878 ATGTCTTCTTCGGAGAATATGGCAGAAGAGGAATCAAAACCATTGAACTTCATACCAGAGGTTATACTCAAGAAGCGAAAAAGCAACGAAGCATGGGCTCTTAGGAAAAAGGCTCAATTAGAGCGCTCCAACTTCCAACCTAACAAGAACAAGGACGCTACCATAAAAAAGCCCGAGGATTTTGTTATTCAATATCGCAACATGGAGCTGGACCTTATTAGAATGAAGCGCAGAGTAAAGAGGAAACTTCCACAGCTGAACTCAGACTCCAAGCCCTTAATTGTCATTCGGATTCACGGGAAAAATGATATGCATCCGAAAACAAGAAAGAATTTGTACAGCTTGGGGTTGAGAAGAGTATTCAATGCTGTCTTTTTGAAGCCATCAGATGGAGTGTTAGCCAAGTTGCAGAGGGTGGAACCATTTGTTACCTATGGATACCCAAATCTTAAGAGCATAAAGGAGCTAATCTACAAGAAGGGGCACATGAAAATAGAGAAGCGGAAAGTTCCGTTGACAGATAATAACATTGTTGAGCAGGAATTGGGGAAGTATGGTATTGTATGCATAGAAGACATGGTGCATCAGATATATAATGTTGGTCCACACTTTAAGGAAGTTATCCAACTTATGTGGCCCTTCGATCTCAACAAACCAGTCGGAGGATTGACAGGATCAAAAACCCTTTTCAAGGATGGTGGAGACTCTGGGAATCGGGAGGATGTCATCAACGAATTAATCTCTAAAATGAATTAA 756 0.4114 MSSSENMAEEESKPLNFIPEVILKKRKSNEAWALRKKAQLERSNFQPNKNKDATIKKPEDFVIQYRNMELDLIRMKRRVKRKLPQLNSDSKPLIVIRIHGKNDMHPKTRKNLYSLGLRRVFNAVFLKPSDGVLAKLQRVEPFVTYGYPNLKSIKELIYKKGHMKIEKRKVPLTDNNIVEQELGKYGIVCIEDMVHQIYNVGPHFKEVIQLMWPFDLNKPVGGLTGSKTLFKDGGDSGNREDVINELISKMN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1878 251 TIGRFAM uL30_euk: 60S ribosomal protein uL30 19 251 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ahy18g1878 251 Gene3D - 198 251 IPR036919 -
Ahy18g1878 251 Gene3D - 93 197 IPR036919 -
Ahy18g1878 251 CDD Ribosomal_L7_archeal_euk 93 251 IPR035808 -
Ahy18g1878 251 PANTHER 60S RIBOSOMAL PROTEIN L7-1 9 251 - -
Ahy18g1878 251 PANTHER 60S RIBOSOMAL PROTEIN L7 9 251 IPR039699 -
Ahy18g1878 251 Pfam Ribosomal L30 N-terminal domain 18 82 IPR012988 -
Ahy18g1878 251 Pfam Ribosomal protein L30p/L7e 93 143 IPR016082 -
Ahy18g1878 251 SUPERFAMILY Ribosomal protein L30p/L7e 94 251 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1878 Ahy-Chr18 91367241 91370040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1878 7 251 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 54.618 1.31e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1878 K02937 - gmx:100500005 377.481