Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1829 ATGCATGCTTCTGTAGGTGAGGATCTGATATATGTGTTCCAATCATTGATATTAGATGGAACTGTGTATGTTTTTACATACTTTGGAGTTAGCAACGACTGTCGGTTGTATCGCACAACATCGCATCAATTTCGGTTGTTTTTTCAAGATAGAACTATTGTCTTACCCTCTTTCTGTGATGCAATACCGTTATATGGTATTAAGTTGGTCCCTTTTAGGAAAATTATGGGATACTCTTCTGATCATCTTTTTTTGGTTGACGTTGCTGGAGTTATGACCGGTGTAGAAGTTGAGGGGAAATATGTGAACGATGGCAAACTTATTAACATGATGGTCATTCATATTGAGAATGCCGGATGCGTTTTTTCCAACAACCCTTACTCACCACTTAATATTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTAGACCAGATCAAGGGTTTTCTGGCATCGGGCGATCAACAACTGTCAATAGTTGTTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCGGATATTCTCGAGGCTTTGATGCTTCAAAAAAGCGTGTACTATAGAGAGATCTCGCAGTACCTATCTGTGATTTCTGGCAAACCGACATATCTTGATGAAGATGAGGTTTTATATTCCACTGGGAGGAAGACAATAAAGGAGTTACGTGCGGTTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTCTTTGTAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGACGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTACAAGTTGAATTTGTTGGTTTTTGATGGTATTGCTACAACGAATTTTGTTGTGTTCGATAAGGAGGTCGCAGCTCTATTCGGACGAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGGAAGCAAGCAAAGATCCTATTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTATATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATTCTTATGATGTATCGATGATACGTTCTGATCCTACGAGTTTACTGAGGTGGAGGGACAATCAAGGCCCGGTAAAATCTGATGTACCCCCTGCTGGTCCTGTTAACCCTGTTCAGCCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTGATCCAATCGTGAAAAATCTGTCTGTTACTAAAAAACCTGTTGTCAGGCACCTGTTGGATGAGTTTAACATGTCTGGTGCTCCTTCCATTAAAAAATAG 1359 0.4032 MHASVGEDLIYVFQSLILDGTVYVFTYFGVSNDCRLYRTTSHQFRLFFQDRTIVLPSFCDAIPLYGIKLVPFRKIMGYSSDHLFLVDVAGVMTGVEVEGKYVNDGKLINMMVIHIENAGCVFSNNPYSPLNILKLNIVVLGEMVDQIKGFLASGDQQLSIVVFQFARVKNAGGTNIVQNIMYGTRLLINPDILEALMLQKSVYYREISQYLSVISGKPTYLDEDEVLYSTGRKTIKELRAVADVGFYVVRATVLDVEPVPSWWYKSCLCSVKAEANADEYFCDGCNRDVNNVVDRYKLNLLVFDGIATTNFVVFDKEVAALFGRTCTEMVKELNEKGEASKDPIGFNEFFLDKEFIFKVEVETTGWCDSYDVSMIRSDPTSLLRWRDNQGPVKSDVPPAGPVNPVQPRGEDGCSVCDESPDPIVKNLSVTKKPVVRHLLDEFNMSGAPSIKK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1829 452 MobiDBLite consensus disorder prediction 388 414 - -
Ahy18g1829 452 PANTHER REPLICATION FACTOR A 1, RFA1 30 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy18g1829 452 SUPERFAMILY Nucleic acid-binding proteins 231 372 IPR012340 -
Ahy18g1829 452 CDD RPA1_DBD_C 233 362 IPR013955 -
Ahy18g1829 452 Gene3D - 61 208 IPR012340 -
Ahy18g1829 452 Gene3D - 225 382 IPR012340 -
Ahy18g1829 452 Pfam Domain of unknown function DUF223 1 76 IPR003871 -
Ahy18g1829 452 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 328 - -
Ahy18g1829 452 Pfam Replication factor-A C terminal domain 246 368 IPR013955 -
Ahy18g1829 452 CDD RPA1_DBD_A_like 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1829 Ahy-Chr18 74213882 74216827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1829 211 361 Core DNA Replication Machinery Family AT5G61000 26.144 4.20e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1829 - - ahf:112729129 764.222