Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1773 ATGGCGAAACCGGGGCGAGGCCATCGCTCTCCGCCCTCGGGCTCCGGCTCCTCCTCCCGCTCCCGTTCCTCTTCCCCTTCAGATTCTCGCTCTTCCTCCCGCTCTCGCTCCCTCTCTCGATCCCGTTCTCCTTCTCGCTCCAGATCCTTCTCTTCCTCCTCCTCCTCCCCGTCTCGCTCCTCCCGAAGCCGAAGCCGAAGCCCTCCCCCTCAGCGCCGAAGAAGCTCCCCTGAAGCAGCCAGGCGAGGTCGATCTCCTCCCCCTCAGTCTAGAAGAGCTTCTCCTCCTCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGGAATGTCAATGAAGACCATTTGAAAGAAATTTTCCGTAACTTTGGCGAGGTTGTAAGTGTGGAGTTGGCAATGGACCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTTAAGACAAGAGCAGATGCTGAAAAAGCTTTATTGTACATGGATGGTGCCCAAATAGATGGGAATGTTGTTAAGGCAAGATTTACACTACCTCCTAGACAGAAAGTTTCTTCACCACCAAAAGCTTCTGCTGTTGCTCTGAAGAGAGATGGCCCTAGGACTGATAATGCTAGTGCAGATGTTGAAAAGGACGGGCCAAAGCGGCCAAGAGAATCTCCTCGGAGAAAACCTCCTCCCTCGCCACGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCAATTCGCCGTCGTGCAGATTCTCCAATTCGCCGTCGATTAGACTCTCCTCATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTATATCCCCTGGGAGAGGCCGTTCTCCATCTCCACCAAGGCGTCTTAGATCCCCTGCAAGGGCCTCTCCAAGAAGGTTGCGGGGAAGTCCAGGTCGTAGACGTTCCCCTCCTCCTCTAAGGCGCCGTTCACCGCCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATAAGTCGTAGGCGCAGTCGCTCTCCAATACGTAGACGCTCACGCTCAAGATCATTCTCACCTCGAAGAGGTCGACCACCTGTAAGACGTGGGAGGTCTTCATCCTACTCTGACTCGCCAAGTCCACGCAAGGTATCCCGGAGATCGAAGAGTCGCAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCACCTCGCAAACCCTAG 1257 0.5434 MAKPGRGHRSPPSGSGSSSRSRSSSPSDSRSSSRSRSLSRSRSPSRSRSFSSSSSSPSRSSRSRSRSPPPQRRRSSPEAARRGRSPPPQSRRASPPPRKPSPVRESLVLHVEKLSRNVNEDHLKEIFRNFGEVVSVELAMDRTVNLPKGYGYVQFKTRADAEKALLYMDGAQIDGNVVKARFTLPPRQKVSSPPKASAVALKRDGPRTDNASADVEKDGPKRPRESPRRKPPPSPRRRSPVPRRVGSPRRPDSPIRRRADSPIRRRLDSPHRRGDTPPRRRPISPGRGRSPSPPRRLRSPARASPRRLRGSPGRRRSPPPLRRRSPPRRARSPPRRSPISRRRSRSPIRRRSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSRSPRRPLRGRGSSNSSSSSSPPPPRKP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1773 418 Gene3D - 8 193 IPR012677 -
Ahy18g1773 418 MobiDBLite consensus disorder prediction 300 367 - -
Ahy18g1773 418 SMART rrm1_1 108 181 IPR000504 GO:0003723
Ahy18g1773 418 MobiDBLite consensus disorder prediction 249 282 - -
Ahy18g1773 418 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 25 403 - -
Ahy18g1773 418 MobiDBLite consensus disorder prediction 184 418 - -
Ahy18g1773 418 CDD RRM_RNPS1 109 181 IPR034201 -
Ahy18g1773 418 PANTHER BNAA09G56240D PROTEIN 25 403 - -
Ahy18g1773 418 MobiDBLite consensus disorder prediction 1 105 - -
Ahy18g1773 418 SUPERFAMILY RNA-binding domain, RBD 91 191 IPR035979 GO:0003676
Ahy18g1773 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Ahy18g1773 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Ahy18g1773 418 MobiDBLite consensus disorder prediction 11 65 - -
Ahy18g1773 418 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1773 Ahy-Chr18 61355881 61361066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1773 109 182 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 8.54e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1773 K14325 - gmx:100783566 251.906