Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1487 ATGTCGGGTGTGGGGCCCATATCGCAGGATTGGGAGCCAGTGGTGATAAGGAAGAAGGCACCAAACGCTGCGGCCAAGAAGGATGAGAAAGCTGTCAATGCTGCTCGCCGCGCCGGAGCTGAGATTGAAACCGTCAAGAAATCAAATGCTGGAACAAATAGAGCTGCCTCTAGTAGCACTTCTTTGAACACCAGGAAGCTTGATGAAGAAACCGAGAATCTTCACCACGACCGTGTACCATCAGAACTAAAGAAAGCCATCATGCAGGCCCGACTGGACAAAAAACTTACTCAGGCTCAGCTGGCTCAGATGATCAATGAGAAGCCACAGATTATACAGGAATATGAATCTGGCAAAGCCATTCCAAATCAACAAATCATAGGGAAACTGGAGAGAGCTCTTGGTGCAAAGCTTCGTGGAAAGAAATGA 429 0.4802 MSGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSNAGTNRAASSSTSLNTRKLDEETENLHHDRVPSELKKAIMQARLDKKLTQAQLAQMINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1487 142 Gene3D - 71 142 IPR010982 GO:0003677
Ahy18g1487 142 CDD HTH_XRE 85 135 IPR001387 -
Ahy18g1487 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Ahy18g1487 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Ahy18g1487 142 MobiDBLite consensus disorder prediction 65 80 - -
Ahy18g1487 142 MobiDBLite consensus disorder prediction 46 64 - -
Ahy18g1487 142 MobiDBLite consensus disorder prediction 21 43 - -
Ahy18g1487 142 MobiDBLite consensus disorder prediction 21 80 - -
Ahy18g1487 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Ahy18g1487 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Ahy18g1487 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Ahy18g1487 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Ahy18g1487 142 SMART mbf_short4 86 141 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1487 Ahy-Chr18 30030817 30034886 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Ahy18g1487 MBF1 6.40E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1487 K03627 - rcu:8288271 257.684