Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1436 ATGGCGAAAACGAGACCAGGGAAAAGAGACTTGGACTCGTACACCATCAGAGGCACCAACAAGATCGTAAGAGTTGGTGACTGCGTTTTGATGCGTCCTTCGGACACATCGAAGCCACCGTACGTGGCGAGAGTGGAGAAGATCGAGTCCGATAGTAGGAACAACGTGAAGGTTCGTGTGAGATGGTACTATAGGCCTGAAGAGTCCATTGGTGGAAGGAGACAGTTCCATGGGGCAAAGGAGCTTTTCTTATCTGATCATTATGACATTCAGAGTGCTCACACCATTGAAGGGAAGTGTGTTGTTCACTCCTTCAAGAACTACACAAAGCTTGAGAATGTGGGTGCCGAAGATTACTACTGTAGGTTCGAGTACAAGGCTGCTACTGGAGCTTTTACACCCGACCGCGTCGCTGTGTATTGCAAGTGTGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGATGCAAGGATTGGTACCATCCTGCATGTGTGGGAATGACTATTGAAGAAGCAAAGAAGTTGGATCACTTTGTATGTTCTGAATGTTCATCTGATGATGACATGAAGAAACCCCAGGCTACATTTCCAGTGTCACCAGGATCTGATGGCAAGATGAATGAATATTTTCAGGTGGAGCCGAAGCGACGGAAGAGATGA 669 0.4753 MAKTRPGKRDLDSYTIRGTNKIVRVGDCVLMRPSDTSKPPYVARVEKIESDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDGKMNEYFQVEPKRRKR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1436 222 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Ahy18g1436 222 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Ahy18g1436 222 Gene3D - 2 134 IPR043151 -
Ahy18g1436 222 SMART PHD_3 140 187 IPR001965 -
Ahy18g1436 222 Pfam PHD-finger 140 188 IPR019787 -
Ahy18g1436 222 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Ahy18g1436 222 PANTHER OS08G0421900 PROTEIN 3 213 - -
Ahy18g1436 222 PANTHER BNAC03G64850D PROTEIN 3 213 IPR045205 GO:0006325|GO:0035064
Ahy18g1436 222 CDD BAH_BAHCC1 22 156 - -
Ahy18g1436 222 MobiDBLite consensus disorder prediction 188 222 - -
Ahy18g1436 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 198 IPR013083 -
Ahy18g1436 222 Pfam BAH domain 23 135 IPR001025 GO:0003682
Ahy18g1436 222 SMART BAH_4 21 136 IPR001025 GO:0003682
Ahy18g1436 222 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1436 Ahy-Chr18 27674714 27678615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1436 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 4.79e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy18g1436 BAH 3.90E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1436 K25868 - gmx:100800993 446.432