Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1416 ATGGTTGCCGCCGGCGAACCCATGAAGAAGAAACCGAAGCAAAACCTACTGAACCCCAATTGGGTTCAACTCCAACAAAAGCTAAAGCTCAATAATAAGTCTTCAAGGACTTACAAAGAAGAAGACACCCCAAAATCAATACTGGGGAAACGTAAAGAGAGCCCGAATGATGAATCCAATGACTCTCAGATTGATCCTCTTATTCCTGTAAATGACGACTCAAGTCTGACAGATGCAGTCGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCATTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCAATTGACTTTTGGACTGCTCAGAAGAAAGTTGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTTAAGGCGTTGTTATTAAGTCATCCGAAAAAGGACATTCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCGCTGCGGCATCTTGCTGCAGAAATTCTTGGTGCCAAGATCCAATCAGGAGAGCACTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAGAGATCAGTTTAGGCTCAAAAAGAAGCAAAATAAACGGAAGAATAAAAAGAAACCAAAGAATGAAGATACTTCAAATGCCAACCATGCTATAATTGAATCATAG 819 0.4151 MVAAGEPMKKKPKQNLLNPNWVQLQQKLKLNNKSSRTYKEEDTPKSILGKRKESPNDESNDSQIDPLIPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAIDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAKIQSGEHCPIQDARAAMLLYQRNRKEWERSLRDQFRLKKKQNKRKNKKKPKNEDTSNANHAIIES* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1416 272 MobiDBLite consensus disorder prediction 16 32 - -
Ahy18g1416 272 MobiDBLite consensus disorder prediction 238 272 - -
Ahy18g1416 272 Gene3D - 75 255 IPR036397 GO:0003676
Ahy18g1416 272 PANTHER RNA EXONUCLEASE 4 33 255 - -
Ahy18g1416 272 SMART exoiiiendus 78 236 IPR013520 -
Ahy18g1416 272 MobiDBLite consensus disorder prediction 1 69 - -
Ahy18g1416 272 MobiDBLite consensus disorder prediction 33 59 - -
Ahy18g1416 272 SUPERFAMILY Ribonuclease H-like 79 234 IPR012337 -
Ahy18g1416 272 Coils Coil 217 237 - -
Ahy18g1416 272 Pfam Exonuclease 80 227 IPR013520 -
Ahy18g1416 272 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 33 255 - -
Ahy18g1416 272 CDD REX4_like 80 228 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1416 Ahy-Chr18 27117382 27121853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1416 79 237 C2H2 Transcription Factor Family AT5G40310 36.000 7.71e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1416 K18327 - gmx:100819122 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1416 18 27117382 27121853 Ahy18g1416 18 27117382 27121853 ECH
Ahy18g1416 18 27117382 27121853 Ahy7g2131 7 79751807 79756069 hybridization