Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1394 ATGGCTCCAAGGGACAGAGCGACCGCACTTAACGGACCCAATCTCACCGCACACAACGCCAAAGAGATCCGTTACAGAGGCGTTAGGAAACGCCCATGGGGACGTTACGCTGCCGAGATCCGCGACCCTGGCAAGAAGACGCGCGTCTGGCTTGGAACTTTTGATACAGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCAAGGGAGTTCCGTGGCGCCAAGGCTAAGACCAATTTTCCGACTCCGGCGGAGCTTCTTAACAACAGCAACAGCTTCGTTAACATTAACAACAGCAACGCCGCGCGTAGCCCTAGCCAGAGTAGCACGCTCGATTCGTCTTCGCCGCCGCCGCCGCCACCGTCGGCGCAGCCGCAGCCGCATCCGCAGCTAGAACTCACGCTGAAGCCGTTTTCGTCCGCCTCCGCTTCCGCCGTCATGGCGTTCCCGGCGTCACGTCCTGTTATGTTCTTTGACGCGTTCGCGCGTGCGGCGGAGAACGTGAGCCGCCGCGAGATGTGTTTCATAGGCGGCGCGTGCAGCGACTCCGACTCTTCCTCCGTGGTGGACTACGAGGGCGTGCCACGTAAGGGACTGTTGGATCTCGACCTCAACATCGCTCCTCCTCCTGAGGTCGCTTGA 642 0.6168 MAPRDRATALNGPNLTAHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPAELLNNSNSFVNINNSNAARSPSQSSTLDSSSPPPPPPSAQPQPHPQLELTLKPFSSASASAVMAFPASRPVMFFDAFARAAENVSRREMCFIGGACSDSDSSSVVDYEGVPRKGLLDLDLNIAPPPEVA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1394 213 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Ahy18g1394 213 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Ahy18g1394 213 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Ahy18g1394 213 MobiDBLite consensus disorder prediction 96 111 - -
Ahy18g1394 213 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ahy18g1394 213 MobiDBLite consensus disorder prediction 112 127 - -
Ahy18g1394 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 11 201 - -
Ahy18g1394 213 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Ahy18g1394 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 201 - -
Ahy18g1394 213 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ahy18g1394 213 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ahy18g1394 213 MobiDBLite consensus disorder prediction 96 130 - -
Ahy18g1394 213 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1394 Ahy-Chr18 26442220 26443396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1394 14 170 AP2-EREBP Transcription Factor Family AT3G15210 62.500 1.46e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy18g1394 AP2 2.00E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1394 K09286 - zju:107432572 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1394 18 26442220 26443396 Ahy8g2006 8 40147951 40149143 hybridization