Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1388 ATGGACAGCTTCTACCACCACCATAACCACCACTTTGACAACAGCGACACTCACTTGCCACCTGGATTCCGATTCCACCCCACCGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTAAGGGACAGGAAGTACCCAACTGGGTTGCGCACAAATAGAGCGACGGAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAGACTTGTGCTCTTGTTGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAGAGCTCCCAAGGGTGAGAAGAGCAACTGGGTGATGCATGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATTTCTCGTGTGTTCCAGAAGACAACCACCGGGGGTGGCGGTGGAGGCGGAGGCTCAGCCGTGTCAACCACCGCCGGCGGGTCCAAGAAGGCAAAAATGAGCACTTCAACCACCACTTCTACAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCACTTCTCGACTCCTCACCTTACACTACCGCCACCACCGGCTCCGTCACCTCCGCCGCCGCAGCATACGACGGCCGCCAGAGCTCCTCCTTCGACAACAACAACAACGATAGCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAACAACTTTGTCAATGGGTTCTTCGATCTTGCTCCTATGGACTCCTTCGCTCGATTCCAAAGAAACAACAATGTCGGTGTTTCTGCATTCCCAAGTCTAAGGTCTCTGCAAGATAACCTTCAAATTAACCCTTTGTTTTTCTCCGCCGCAGCGGCGCAGCCTCTCCACGGCGGCGAGCTTCACGCCGCGGGGGCCTGGCCGGTGCCGGAGGATCAGAGGGTTGCCGAGGCTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTTGATTGCATGTGGGGCTATTGA 1101 0.535 MDSFYHHHNHHFDNSDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGGGGSAVSTTAGGSKKAKMSTSTTTSTMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAAYDGRQSSSFDNNNNDSTREHVSCFSTISNNFVNGFFDLAPMDSFARFQRNNNVGVSAFPSLRSLQDNLQINPLFFSAAAAQPLHGGELHAAGAWPVPEDQRVAEAAAAGMALGHSELDCMWGY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1388 366 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Ahy18g1388 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 362 - -
Ahy18g1388 366 MobiDBLite consensus disorder prediction 175 198 - -
Ahy18g1388 366 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Ahy18g1388 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 10 362 - -
Ahy18g1388 366 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Ahy18g1388 366 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1388 Ahy-Chr18 26244182 26247110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1388 1 366 NAC Transcription Factor Family AT5G53950 52.284 3.73e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy18g1388 NAM 1.10E-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1388 - - cam:101501114 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1388 18 26244182 26247110 Ahy8g2002 8 40057037 40059531 hybridization