Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1382 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGAGTTTCTCCACCTTCCTGCCAGGCTGAGAGGTGTGGCGCCGACTTGACCGAGGCAAAAAGATACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAACGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACACCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATCAGATGA 570 0.5298 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGVSPPSCQAERCGADLTEAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNTDDRGRTQMNISGSSGYKSFHIR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1382 189 MobiDBLite consensus disorder prediction 1 20 - -
Ahy18g1382 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 189 IPR044817 GO:0003677
Ahy18g1382 189 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Ahy18g1382 189 Pfam SBP domain 67 140 IPR004333 GO:0003677
Ahy18g1382 189 MobiDBLite consensus disorder prediction 1 69 - -
Ahy18g1382 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 189 - -
Ahy18g1382 189 MobiDBLite consensus disorder prediction 21 36 - -
Ahy18g1382 189 Coils Coil 12 32 - -
Ahy18g1382 189 MobiDBLite consensus disorder prediction 132 189 - -
Ahy18g1382 189 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Ahy18g1382 189 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1382 Ahy-Chr18 26016464 26017843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1382 52 154 SBP-box Gene Family AT1G53160 70.192 1.64e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy18g1382 SBP 1.00E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1382 - - gmx:100815775 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0917 18 11463805 11465055 Ahy18g1382 18 26016464 26017843 ECH
Ahy18g1382 18 26016464 26017843 Ahy20g0431 20 4355353 4356806 ECH
Ahy18g1382 18 26016464 26017843 Ahy13g3357 13 130693461 130695245 ECH
Ahy18g1382 18 26016464 26017843 Ahy18g1382 18 26016464 26017843 ECH
Ahy18g1382 18 26016464 26017843 Ahy8g1997 8 39924438 39925675 hybridization