Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1379 ATGGTGATTCTCAGATGTTTGTCAGTGACAATAATTCTGCAGTGGTGTATGTTGGCTTGCTTGCTATGGCAGGCCATATCATCATCTTGTGACCCTCTTGATTCATCAGCACTGAAGGAATTTGCAGGCAACCTTACAAAGAACAATTTCATGACATCATGGTCTAATGATGTTTCTTGCTGCCAGTGGTATGGTGTTATTTGTGGTAATGTAACTGCTGGTGGTGGTGGTGGAGCAGCATCTAGCAGAGTTACTAAGTTGAACCTCCCTGGAATTGGTCTCAATGGTACAATTCCAGCATCTTTATCAAAGCTAGATCAGCTAATTTTTCTGAATCTGTCGTTCAACCATCTTGGAGGTCGATTGCCTGTGGAATTCTCCAATTTGAAGCTCCTGAGGATCCTTGATTTGAGCCATAACATGCTTTCAGGACCGGTTTCAGCAGCGATTTCCGGTTTGCAATCCATTCAAGTGTTGAACATTTCCAGCAATTCATTTGATGAGGACATGCTCAAGCTTGGTGAGTTTCCTCAGCTCCTTGCTCTCAACATGAGTAACAATTCATTCAATGGCAGGTTCAATTCCAGAATTTGCAGTTCCTCAAAGGGTCTTCAAACCCTTGATTTATCTGCAAATCATCTTGTTGGTGGTCTTGAAGGCTTGGACAATTGCGCGAAATCTCTTCAACAGTTGCATTTGGATTCAAATTCATTCACTGGCACTCTTCCAGATTCATTGTATTCATTTTCAGCATTGGAGCAATTCTCAGTCTCAGCCAACAATCTCTCTGGCCAGTTAAGCAGGGAATTAAGTAAGCTCTCTAGCCTAACAGCTCTTGTTGTTTCGGGGAACCGGTTTTCCGGGGAGCTCCCGAATGTGTTTCGGAGCCTCTTGAACCTAGAACAATTGGTCGCACATGCCAATTCATTTACTGGACCATTGCCTTCTACGTTGGCTTTTTGCTCAAAGCTTAAGGTGCTTGATCTTAAGAACAACTCTTTGTCTGGTCAAATTGATCTTGATTTCACTGGCTTGTCTAATCTTAGCACACTTGATCTTGCTACTAATCACTTCAATGGATCCCTTCCGAACTCGTTGTCCAATTGCCGTGAATTGAAAGTCTTAAGCCTTGCTAGGAATGGGCTAACTGGTCGAATTCCCGAAAGTTATGCCAATCTCACTATGCTTTCTTTTGTGTCTATCTCAAATAACAGCTTAGTTGACTTATCCGGGGCTCTATCTGTTCTGAAGCAGTGTAAAAACCTCACCACTCTTATCTTCACAAAGAATTTCCATGGTGAGGAAATCCCGCAAAATGTAACTTTAGGATTCGAGAGCCTTTTGATTTTGGCATTCGGAAATTGTGGTCTTAAAGGCCAAATTCCTCCATGGATATCAAATTGCAGGAAATTGGGAGTCCTTGATTTGTCTTGGAACAATTTGAATGGTAGTATTCCCTCTTGGATTGGTCACATGGACAGTTTGTTCTACTTGGATTTGTCGAACAATTCTCTGACCGGAGGAATTCCGAAAAGCTTGACAGAGTTGAGGGGCCTCATGTCGACGAATTGTACCCGGCCGAATCTCACGGTATCCTCCGGCATTCCACTCTTTGTGAAGAGAAATAAGAGTGCTAGTGGACTACAATATAACCAGGCCTCGAGTTTCCCTCCATCAATTTTGTTGAGCAATAACATGTTGAGTGGAAGTATATGGCCTGAAATCGGTCACTTGAAAGATCTTCATGTCTTAGATTTGAGCAGGAATAACATTTCTGGTACCATTCCTAGCACTATCTCAGAGATGGAGAACTTGGAAATGTTGGATTTATCCTACAACGACCTTGTTGGATCAATCCCTGAATCATTTAACAACCTCACATTCTTGTCGAAGTTCAGTGTGGCATATAATCGATTGCAAGGAAAAATTCCAGATGGAGTGCAATTTTATAGCTTCCCTAGTTCAAGCTTTGAGGGCAACTTGGGGCTTTGTGGAGCCATTGATTTACCTTGCAAAAACGTCCCAAGTTTAAAGCCCAGTTCGTCTTCTGGTTCTTCGAGAAAACGAGCTAATGTACTTGGCTTAACGATCGGCATAGGGATAGGGCTTGCACTGCTTCTTGCAATTATTCTGCTCAAGATGTCAAAGAGGGAAGATAAGCCAGTTGATAATTATGATGAGGAACTCAGCAATAGGCCACACAGGTTATCCGAAGCACTTGTTGCCTCGAAATTGGTTCTGTTTCATTCGGATTGCAAGGATCTAACTGTTGCGGATTTGTTAAAATCCACAAACAATTTCAATCAAGCAAATATTGTTGGTTGTGGTGGGTTTGGCCTTGTTTACAAGGCATATCTTCCAAATGGCACAAAAGCCGCCATCAAGAGACTCTCCGGGGACTGTGGTCAGATGGAACGAGAATTCCAAGCCGAAGTAGAGGCCCTTTCAAGAGCTCAGCACAAGAACCTTGTTTCTCTTAAAGGTTATTGTAAGCATGGCAATGACAGGCTGCTAATTTACTCTTACTTAGAGAATGGAAGCTTGGATTACTGGCTGCATGAGAGTGTGGATGGGAATTCGACTCTAAAATGGGACGTGAGGCTCAAGATTGCGCAAGGTGCAGCTCGCGGATTAGCTTACTTGCACAAGGGGTGCGAACCATACATAGTGCACCGTGACGTTAAATCCAGCAACATACTGTTGGATGACAAGTTCGAAGCTCATTTGGCTGATTTCGGTCTCTCAAGGCTACTTCAACCTTATGATACTCATGTCACAACAGATTTAGTAGGGACATTAGGGTACATTCCTCCAGAATATAGTCAGACACTGACGGCAACCTTCCGGGGCGATGTTTATAGCTTCGGCGTGGTTCTTCTCGAGCTTCTTACGGGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAGAATTGCAGGAACTTGGTGTCTTGGGTGTTTCAGATGAAATATGAGAACAAGGAGCAAGAGATCTTTGATCCAGCAATTTGGCACAAGGATCATGAGAAACAGCTCTTGGAGGTTCTTGCTATTGCATGTAAATGTCTAGACCAAGATCCTAGGATGAGACCTAGCATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGTCCCTCAACAGTGA 3147 0.4315 MVILRCLSVTIILQWCMLACLLWQAISSSCDPLDSSALKEFAGNLTKNNFMTSWSNDVSCCQWYGVICGNVTAGGGGGAASSRVTKLNLPGIGLNGTIPASLSKLDQLIFLNLSFNHLGGRLPVEFSNLKLLRILDLSHNMLSGPVSAAISGLQSIQVLNISSNSFDEDMLKLGEFPQLLALNMSNNSFNGRFNSRICSSSKGLQTLDLSANHLVGGLEGLDNCAKSLQQLHLDSNSFTGTLPDSLYSFSALEQFSVSANNLSGQLSRELSKLSSLTALVVSGNRFSGELPNVFRSLLNLEQLVAHANSFTGPLPSTLAFCSKLKVLDLKNNSLSGQIDLDFTGLSNLSTLDLATNHFNGSLPNSLSNCRELKVLSLARNGLTGRIPESYANLTMLSFVSISNNSLVDLSGALSVLKQCKNLTTLIFTKNFHGEEIPQNVTLGFESLLILAFGNCGLKGQIPPWISNCRKLGVLDLSWNNLNGSIPSWIGHMDSLFYLDLSNNSLTGGIPKSLTELRGLMSTNCTRPNLTVSSGIPLFVKRNKSASGLQYNQASSFPPSILLSNNMLSGSIWPEIGHLKDLHVLDLSRNNISGTIPSTISEMENLEMLDLSYNDLVGSIPESFNNLTFLSKFSVAYNRLQGKIPDGVQFYSFPSSSFEGNLGLCGAIDLPCKNVPSLKPSSSSGSSRKRANVLGLTIGIGIGLALLLAIILLKMSKREDKPVDNYDEELSNRPHRLSEALVASKLVLFHSDCKDLTVADLLKSTNNFNQANIVGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCKHGNDRLLIYSYLENGSLDYWLHESVDGNSTLKWDVRLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKYENKEQEIFDPAIWHKDHEKQLLEVLAIACKCLDQDPRMRPSIEVVVSWLDSVRFDVPQQ* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1379 1048 Pfam Leucine Rich Repeat 495 514 IPR001611 GO:0005515
Ahy18g1379 1048 Gene3D Transferase(Phosphotransferase) domain 1 843 1046 - -
Ahy18g1379 1048 PRINTS Leucine-rich repeat signature 495 508 - -
Ahy18g1379 1048 PRINTS Leucine-rich repeat signature 602 615 - -
Ahy18g1379 1048 SMART serkin_6 767 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 174 282 - -
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 457 518 - -
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 615 1041 - -
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 440 - -
Ahy18g1379 1048 Pfam Leucine rich repeat 581 639 IPR001611 GO:0005515
Ahy18g1379 1048 Pfam Leucine rich repeat 227 286 IPR001611 GO:0005515
Ahy18g1379 1048 Gene3D Ribonuclease Inhibitor 34 154 IPR032675 -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 457 518 - -
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 165 - -
Ahy18g1379 1048 SUPERFAMILY RNI-like 226 528 - -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 174 282 - -
Ahy18g1379 1048 SUPERFAMILY Protein kinase-like (PK-like) 750 1038 IPR011009 -
Ahy18g1379 1048 Gene3D Ribonuclease Inhibitor 169 406 IPR032675 -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 29 165 - -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 560 617 - -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 615 1041 - -
Ahy18g1379 1048 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 440 - -
Ahy18g1379 1048 SMART LRR_sd22_2 201 223 - -
Ahy18g1379 1048 SMART LRR_sd22_2 602 628 - -
Ahy18g1379 1048 SMART LRR_sd22_2 321 350 - -
Ahy18g1379 1048 SMART LRR_sd22_2 578 601 - -
Ahy18g1379 1048 SMART LRR_sd22_2 129 155 - -
Ahy18g1379 1048 SUPERFAMILY L domain-like 53 315 - -
Ahy18g1379 1048 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 560 617 - -
Ahy18g1379 1048 SMART LRR_typ_2 492 516 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 602 625 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 105 128 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 393 416 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 345 369 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 129 152 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 578 601 IPR003591 -
Ahy18g1379 1048 SMART LRR_typ_2 273 296 IPR003591 -
Ahy18g1379 1048 SUPERFAMILY L domain-like 548 664 - -
Ahy18g1379 1048 ProSitePatterns Protein kinases ATP-binding region signature. 773 795 IPR017441 GO:0005524
Ahy18g1379 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Ahy18g1379 1048 Gene3D Phosphorylase Kinase; domain 1 730 842 - -
Ahy18g1379 1048 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Ahy18g1379 1048 Pfam Protein kinase domain 768 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g1379 1048 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Ahy18g1379 1048 ProSiteProfiles Protein kinase domain profile. 767 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g1379 1048 CDD STKc_IRAK 773 1039 - -
Ahy18g1379 1048 Gene3D Ribonuclease Inhibitor 407 678 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1379 Ahy-Chr18 25905419 25909864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1379 31 510 Receptor kinase-like Gene Family AT1G55610 30.265 2.65e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ahy18g1379 Pkinase 2.00E-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1379 - - gmx:100797812 1593.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1379 18 25905419 25909864 Ahy18g1379 18 25905419 25909864 ECH
Ahy18g1379 18 25905419 25909864 Ahy8g1995 8 39882181 39886632 hybridization