Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1352 ATGTGTTGTTGTTCTTGGTCTACATGCATCTCTAACTGGATAAAGATGGAAGGTTCTTCAGGTTCTGGCTGGCAGAAATCTGATAGCTCGAGGACGTTGAATAGTTCCGGAGTCTCTGATAGGAACCAAAGGCATCGTTGTCCTGAAAGAAATCGCTTATCTGGTGAGGCTTCGCACGATTCCAGCTTTAAGAAGGAGAGGGACAGGGTTCTTTTGGCACAAGGTGATCACAATAAGAATCTGGCTGGGTTTTCGGGGTTTTGTGATGACGAATTAGGGGCGGACCCTTTTGTTTGCTCTATAGAATGGGGTGATATTAGCCTGAGGCAATGGTTAGATAAACCGGATCGATCCGTAGATGTCTTTGAATGTTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACTTAGCACATTCTCAAGGAGTTGTAGTTCATAATGTCAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAACCACATCTCATTTATTGAATCTGCGTCTTGTTCGGATTCTGGATCAGATTCTTTAGGAGATGGATTGAATGGCCAAGGTGTTGAGGTTAAAACTCCGACGTCTCTCTGCCCCCACGACATGCATCAGCGGAGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAACCCTCAACAACTGCTTTGTCAGATTCTAGTTGCATGCTGTCGAGTGCAGTGTATGCAGCTCGTGCGTCGTTAATAGAAGAAACAGAAGAAAATAAAATGAAGGATAGGAGAAAGGCCGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGATACTATTGATGGAGATGAGTTGGTATACTAGTCCCGAAGAGGCTTCGGGCAGTCCTAGTTCCTGTGCTTCAGATGTTTACCGGTTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTGAGCTCAAGAGAAGAGAAGAGTAGAACCATGTCTAGCCTTCGACACAGAGTTCTTCCTCCGCAGTTACTTCTAAAGTGGCCTAAAGAAGCCTCCTTTTGCTTATTGTTACTACATCCCGAGCCTAGTAGTCGTCCAACATTGGGGGATTTGCTGCAGAGCGATTTCCTCAATGAACAGAGAGATGACATGGAAGAACGGGAAGCAGCAATAGAACTTCGACACAGAATAGAGGATCAGGAATTGTTACTAGAATTCCTTTTGTTAATTCAACAAAGAAAACGGGAAGTAGCTGAGAAGTTGCAACACACTATCTCATTTCTGTGTTCGGATATTGAAGAAGTTGCCAAGAAGCAAGGCAGACTTAAAGAGATTACCGGAGCCGAACTAAGGTGTGATGATCATTCGACATCAAGTTTCCCATCCATGACTGTTGTTGATAGTGAGGATTCTGCTTGCACGGGGACCAGAAAACGATTTAGACCAGGGATGCATGTTAGAAACATGGAGGAATATGATGATAACATAGTTGATGATCAGAAAAATCAGGGAAGTTATCTTTCGAAAAGCTCACGGCTGATGAGGAACTTTAAGAAACTAGAATCGGCATACTTCTTAACACGTTGCCGACCATCGTTGGCGAGACCAGTGGCTAGACATTTGCCTTTAGCAAACGACGGTAGAGGTTCTGTAGTTGTGTCTGAAAGAAGTTGTGTCAACAACTTAGCATCAAAAGAGCAATGCAGGGAGGGTTCGAGTGCTTGGATAAATCCTTTCCTTGAAGGTTTATGCAAGTACTTATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTTAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGCTTTGATCGTGACGGAGAATTTTTCGCTACTGCTGGCGTGAATAAGAAGATCAAAGTGTTTGAATGTGATGCAATCATAAATGAGGATCGTGATATCCACTATCCGGTGGTGGAGATGGCTAGTAGGTCAAAGTTGAGCAGCATATCTTGGAATACCTACATCAAAAGTCAAATTGCTTCGAGTAACTTCGAAGGGGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTACTGTCCGAAATGCGGGAGCATGAGCGGCGGGTGTGGTCGATCGATTTCTCATCAGCAGATCCGACAATGTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTATCGGTACCATCAAGACGAAGGCGAATGTGTGCTGCGTTCAGTTCCCTCTCGATTCAGCCCGCTTCCTCGCATTTGGTTCGGCAGATCACCGGATATACTACTATGATCTTCGCAACTTGAAAGTGCCACTTTGTACATTGATTGGACATAGTAAGACTGTGAGCTACATCAAGTTTGTAGACAATGTGACTCTTGCCTCTGCATCCACGGATAACACACTTAAGCTTTGGGATTTGTCTACATGCGCGTCTCGAGTCATCGACTCGCCTGTTCAATCATTCACCGGTCATATGAATGTTAAGAACTTTGTGGGGTTATCAGTTTCCGACGGTTATATAGCCACCGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCCTTTCCCATGCCGGCGTTATCATTCAAGTTTCAGAACACCGACCCCCTTTCCGGCCATGAAGTCGAAGATGCCACACAGTTTGTCTCTTCGGTATGTTGGCGCGGCCAGTCCTCCACCTTGCTTGCGGCGAATTCGACTGGGAATGTCAAGATTCTGGAGATGGTTTGA 2709 0.4459 MCCCSWSTCISNWIKMEGSSGSGWQKSDSSRTLNSSGVSDRNQRHRCPERNRLSGEASHDSSFKKERDRVLLAQGDHNKNLAGFSGFCDDELGADPFVCSIEWGDISLRQWLDKPDRSVDVFECLHIFRQIVEIVNLAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDSGSDSLGDGLNGQGVEVKTPTSLCPHDMHQRSLGSEDFVPVKPSTTALSDSSCMLSSAVYAARASLIEETEENKMKDRRKAEEVEGKKQSFPMKQILLMEMSWYTSPEEASGSPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLLLLHPEPSSRPTLGDLLQSDFLNEQRDDMEEREAAIELRHRIEDQELLLEFLLLIQQRKREVAEKLQHTISFLCSDIEEVAKKQGRLKEITGAELRCDDHSTSSFPSMTVVDSEDSACTGTRKRFRPGMHVRNMEEYDDNIVDDQKNQGSYLSKSSRLMRNFKKLESAYFLTRCRPSLARPVARHLPLANDGRGSVVVSERSCVNNLASKEQCREGSSAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDAIINEDRDIHYPVVEMASRSKLSSISWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKVPLCTLIGHSKTVSYIKFVDNVTLASASTDNTLKLWDLSTCASRVIDSPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVEDATQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1352 902 Coils Coil 238 258 - -
Ahy18g1352 902 SMART WD40_4 759 797 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 806 845 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 716 755 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 856 900 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 585 620 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 631 670 IPR001680 GO:0005515
Ahy18g1352 902 SMART WD40_4 673 713 IPR001680 GO:0005515
Ahy18g1352 902 MobiDBLite consensus disorder prediction 42 64 - -
Ahy18g1352 902 ProSitePatterns Trp-Asp (WD) repeats signature. 784 798 IPR019775 -
Ahy18g1352 902 MobiDBLite consensus disorder prediction 18 41 - -
Ahy18g1352 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 800 IPR001680 GO:0005515
Ahy18g1352 902 PRINTS G protein beta WD-40 repeat signature 657 671 IPR020472 -
Ahy18g1352 902 PRINTS G protein beta WD-40 repeat signature 700 714 IPR020472 -
Ahy18g1352 902 PRINTS G protein beta WD-40 repeat signature 784 798 IPR020472 -
Ahy18g1352 902 ProSiteProfiles Protein kinase domain profile. 1 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g1352 902 Pfam WD domain, G-beta repeat 762 797 IPR001680 GO:0005515
Ahy18g1352 902 Pfam WD domain, G-beta repeat 590 619 IPR001680 GO:0005515
Ahy18g1352 902 Pfam WD domain, G-beta repeat 676 713 IPR001680 GO:0005515
Ahy18g1352 902 SUPERFAMILY Protein kinase-like (PK-like) 69 360 IPR011009 -
Ahy18g1352 902 Gene3D Transferase(Phosphotransferase) domain 1 105 374 - -
Ahy18g1352 902 SUPERFAMILY WD40 repeat-like 590 899 IPR036322 GO:0005515
Ahy18g1352 902 SMART serkin_6 13 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g1352 902 Gene3D - 566 902 IPR015943 GO:0005515
Ahy18g1352 902 PANTHER PROTEIN SPA1-RELATED 3 16 902 - -
Ahy18g1352 902 PANTHER PROTEIN SPA1-RELATED 2 16 902 IPR044630 GO:0009640
Ahy18g1352 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 680 717 - -
Ahy18g1352 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 766 800 - -
Ahy18g1352 902 MobiDBLite consensus disorder prediction 18 64 - -
Ahy18g1352 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 680 722 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1352 Ahy-Chr18 24946274 24951583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1352 670 844 Miscellaneous Gene Families AT5G08390 25.424 5.00e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Ahy18g1352 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1352 - - gmx:100811457 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1352 18 24946274 24951583 Ahy18g1352 18 24946274 24951583 ECH