Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1338 ATGGCTGAGTTCACAGAACTATTCCCAATGGGAAAACAGCTAGATGAATTGAAGTATGTGTATCAATACATCTTCACAATTAATTTTCAAAGTATATTGGTTGTTTGTGTCATAGTCACATTGTTCTTCTTCATATTCTACCAAATATTCCATGGCATGTTCTTTTGGTTCTTGGAACTACGGTTGAATAACGAGTTGCTTGATCTCGAAGGAGCAAATTATCTAACGTCCGGAGCTGCACCCAGTAATAACCATGTTACCCTCTTCGAAGTTCTCATCCATACCAATAGTTGGAATATGGCAGATATCTTAGAGGAAGGTGATTTCGACAAGGATAGAGGACCAAAGCTTAGAGCGTTGATGAAATTGCCCCCATTGGTGAGATATGGAATGCATGGTACAACAAAAAATAATGACTGTCCCATTTGCTTGGAAGATTTTAATGCTGGCCAATTTTGCCAAATATTTCCATCTTGCAAACACATGTATCATTCAAATTGTATAGATAGTTGGTTGAAGAAGAAGCTAACATGCCCAGTTTGTCGTAGTTGTATTGTGTCAAGATGA 567 0.3774 MAEFTELFPMGKQLDELKYVYQYIFTINFQSILVVCVIVTLFFFIFYQIFHGMFFWFLELRLNNELLDLEGANYLTSGAAPSNNHVTLFEVLIHTNSWNMADILEEGDFDKDRGPKLRALMKLPPLVRYGMHGTTKNNDCPICLEDFNAGQFCQIFPSCKHMYHSNCIDSWLKKKLTCPVCRSCIVSR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1338 188 Pfam Ring finger domain 138 182 IPR001841 -
Ahy18g1338 188 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Ahy18g1338 188 PANTHER - 25 186 - -
Ahy18g1338 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 186 - -
Ahy18g1338 188 SMART ring_2 140 181 IPR001841 -
Ahy18g1338 188 SUPERFAMILY RING/U-box 139 186 - -
Ahy18g1338 188 CDD RING-H2_PA-TM-RING 139 182 - -
Ahy18g1338 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1338 Ahy-Chr18 24594693 24595259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1338 27 182 C3H Transcription Factor Family AT1G53010 31.288 3.99e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1338 - - aip:107610754 381.719