Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1230 ATGATGGAAGTGGAGCCTATGGATTTGCTTCGATCAAATCTTTCCCGCGTTCGCATCCCCGAACCCACCAATCGCATCTTCAAGCATGAATGCTGCCTCTCCTTCGATACCCCCAAGTCAGAGGGTGGGTTGTACATCGACATGTTCACTTTCCTTGCCTTTGGGAAGGACTGTGTGGGTTGGAATTTCGAGAAGACTGGTAACCCTGTTTATTTGCATGTAAAGAAGACCAAGAAGCTGGTTCCAGAAGACAGGCCTACCAAGAAACCAACCCGCTTGGCGATAGGGGTTGAAGGGGGATTCGACAACAATGAACCCGAATATGAAGAAACTCATAGTATAGTCATTTTACCAAACTATATATCTCTTCCATTCCCATCTGTTGAATTGCCAGAGAAGGTAAGGTTGGCTGCAGATGCTATAGTACTAGCTGAGGGTGCTGAACGGAAGGAGCAGGTTGCAGCTTGGACTGCTGATAAGAAAACAGTTAGTACCTATGCAATGAATTTACAGCAACTTGACAATGGTGTTGTCATCCCTCCGTCTGGTTGGAAATGTGCCAAGTGTGACAAGACGGATAATCTTTGGCTAAATCTGACTGATGGGATGATTCTTTGTGGGAGGCGAAATTGGGATGGAAGTGGTGGAAACAACCATGCTGTTGAGCATTACAATGAGACAGGCTACCCTCTTGCTGTAAAGCTCGGGACTATCACTGCTGATTTGGAAGCAGCAGACGTTTACTCATATCCAGAGGACAACAGCGTCTTAGACCCACATCTAGCACAGCATCTGGCCTTTTTTGGCATTGACTTCTCATCACTGCAAAAGACTGAAATGACGACCGCCGAAAGAGAACTTGATCACAATACCAATTTCGATTGGAATCGGATCCAAGAAAGTGGAGAGGAAAAGGAACCAATTTTTGGACCTGGATACACGGGATTGGTCAATCTTGGCAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTCACAACAAGATCATTCTGTTCAAGGTACTATATAAACCAAAGTCTGAAAAAGGCATTTGAGACGGCTCCTGCTGATCCAACCGTCGACTTGAATATGCAACTGACAAAACTGGCCCATGGTCTACTATCTGGCAAATATTCTATGCCAGTTTATGAGAATGATGACAATTCAAGCATTGATGCCACAACTAAGACTCCAAAACAGGAAGGGATACCTCCACGTATGTTCAAGTCTGTGATTGCTGCCAGTCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTCGATCAAGTTGAAAGATCTAATGCTGGGAAAGCTGAACTAGATCCTGCAAAGTGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAAAAGACGAGACTACATTCTATCTCTTAATATCCCATTGCACGAAGCAACTAATAAAGAAGAAATGGAATTATTTCGCAAATTGAAAGCAGAGAAGCTTTCTGAAGGGAAGGATGTGTCGGCCGAAGAGATTGTACGTCCAAGAGTTCCTTTAGAAGCTTGCCTTAGAAACTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGCACTGCCTTGAAAGCAAAGACAACAGCATTGAAGACAGCTGGTTTCACATCATTCCCTGATTACCTCGTGTTACATATGAGGAAATTCGTTATGGAGGAGGGATGGGTGCCCAAAAAGCTTGATGTGTACATAGATGTTCCTGATATCATAGATATTAATCATATGCGTAGCAAAGGTCATCACCCAGGGGAAGAACTGTTACCAGATGCGGAACCCATTGACGAGGATTCAAACCAACCTTCCGCCAATGAAGACATTGTGGCACAGCTGGTTTCCATGGGTTTTAACCAGCTTCATTGTCAGAAGGCAGCTATTAACACCTCAAATGCTGGAGTAGAGGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAGTCCTATTTCAAAAGGGAACAGCTCTGACAACGTTGATCAATCAAAAGTGGACATACTCATTTCTTTTGGATTTGAAGATCATGTTGCTCGAAAGGCATTGAAGGCATCGGGTGAAGACATTGAGAAGGCAACAGAGTGGATATTCAGCAATCCCGATGCATCAGTTTCTAGTATGGATGCTAGTGCATCAAACACAACCTCTGCTTCAAATGATGTTGGCTTGTCAGATGGAGGAGGAAAATATCGACTTATAGGAATTGTTAGCCACATGGGAACCTCGACACATTGTGGGCACTATGTAGCTCACATTTTGAAAGAAGGTAGATGGGTTATTTTCAATGACGCCAAGGTTGCGGTTTCGGTCAATCCTCCCAAGGACATGGGCTATCTATATTTTTTCGAGAGGATTGATGGTTGA 2433 0.4328 MMEVEPMDLLRSNLSRVRIPEPTNRIFKHECCLSFDTPKSEGGLYIDMFTFLAFGKDCVGWNFEKTGNPVYLHVKKTKKLVPEDRPTKKPTRLAIGVEGGFDNNEPEYEETHSIVILPNYISLPFPSVELPEKVRLAADAIVLAEGAERKEQVAAWTADKKTVSTYAMNLQQLDNGVVIPPSGWKCAKCDKTDNLWLNLTDGMILCGRRNWDGSGGNNHAVEHYNETGYPLAVKLGTITADLEAADVYSYPEDNSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDHNTNFDWNRIQESGEEKEPIFGPGYTGLVNLGNSCYLAATMQVVFTTRSFCSRYYINQSLKKAFETAPADPTVDLNMQLTKLAHGLLSGKYSMPVYENDDNSSIDATTKTPKQEGIPPRMFKSVIAASHPEFSSMRQQDALEFFLHFLDQVERSNAGKAELDPAKCFKFGIEDRILCSSGKVAYNKRRDYILSLNIPLHEATNKEEMELFRKLKAEKLSEGKDVSAEEIVRPRVPLEACLRNFSAPEEIHDFYSTALKAKTTALKTAGFTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDAEPIDEDSNQPSANEDIVAQLVSMGFNQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDSPISKGNSSDNVDQSKVDILISFGFEDHVARKALKASGEDIEKATEWIFSNPDASVSSMDASASNTTSASNDVGLSDGGGKYRLIGIVSHMGTSTHCGHYVAHILKEGRWVIFNDAKVAVSVNPPKDMGYLYFFERIDG* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1230 810 ProSiteProfiles Zinc finger UBP-type profile. 162 272 IPR001607 GO:0008270
Ahy18g1230 810 Gene3D - 660 728 - -
Ahy18g1230 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Ahy18g1230 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 111 IPR013083 -
Ahy18g1230 810 Pfam Ubiquitin carboxyl-terminal hydrolase 314 805 IPR001394 GO:0004843|GO:0016579
Ahy18g1230 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 623 664 IPR015940 -
Ahy18g1230 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 315 330 IPR018200 GO:0004843|GO:0006511
Ahy18g1230 810 Gene3D - 624 659 - -
Ahy18g1230 810 CDD Peptidase_C19B 315 806 - -
Ahy18g1230 810 SUPERFAMILY UBA-like 669 724 IPR009060 GO:0005515
Ahy18g1230 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 259 IPR013083 -
Ahy18g1230 810 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 314 808 IPR028889 -
Ahy18g1230 810 SMART uba_6 684 721 IPR015940 -
Ahy18g1230 810 SMART uba_6 625 663 IPR015940 -
Ahy18g1230 810 Pfam UBA/TS-N domain 684 719 IPR015940 -
Ahy18g1230 810 Pfam UBA/TS-N domain 625 661 IPR015940 -
Ahy18g1230 810 Pfam Zn-finger in ubiquitin-hydrolases and other protein 186 260 IPR001607 GO:0008270
Ahy18g1230 810 PIRSF UBP 7 809 IPR016652 GO:0004843|GO:0016579
Ahy18g1230 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 809 - -
Ahy18g1230 810 SUPERFAMILY Cysteine proteinases 310 809 IPR038765 -
Ahy18g1230 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 809 - -
Ahy18g1230 810 Gene3D Cysteine proteinases 307 810 - -
Ahy18g1230 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Ahy18g1230 810 SUPERFAMILY RING/U-box 163 272 - -
Ahy18g1230 810 MobiDBLite consensus disorder prediction 602 621 - -
Ahy18g1230 810 Pfam Variant UBP zinc finger 17 79 IPR041432 -
Ahy18g1230 810 SMART Zf_UBP_1 185 240 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1230 Ahy-Chr18 21050803 21057197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1230 622 687 C2H2 Transcription Factor Family AT1G04850 34.848 6.18e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1230 18 21050803 21057197 Ahy18g1230 18 21050803 21057197 ECH