Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1142 ATGAGACAAGCAGGTGCATATTCCGGGATACTATGTGGGGGCATTTCTGGAAGAACAGGGCCACACTCTTTGCCATTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGTGAAGATGTTAAGATGATTTCTGGTGAGGCACCTATTGTTTTCTCAAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCTTGGATCGTCGCCATCCATGGAAAGAGGAGAACCTTGCATAAAGATGACGTGGCATCTGCCGTCGTCGCCACTGATATCTTTGACTTTTTGGTCACTTTGGTGTCTCATAATCATGGAAGCGCTTTGAATAATGCCAATAATGATGGTGCTGTTATGGAAATTCAGACATTAGAGTATTCTTAA 381 0.4304 MRQAGAYSGILCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWIVAIHGKRRTLHKDDVASAVVATDIFDFLVTLVSHNHGSALNNANNDGAVMEIQTLEYS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1142 126 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 111 - -
Ahy18g1142 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Ahy18g1142 126 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Ahy18g1142 126 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Ahy18g1142 126 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1142 Ahy-Chr18 17929537 17929917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1142 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.265 3.20e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy18g1142 CBFD_NFYB_HMF 9.30E-19 CL0012