Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1128 ATGGCTTTGAGGGCGGCAGCGGCTATAGCTGCAGCGCAACCTTCGTCGCGCGGTTTATTGCGGCTGCTTTCGAGCCGTTCTGCTTATCCGCCGTCGACTACTGCCGCAGTGTTTGCTCGACAGGCGGTGGAGCCCAAATCCTCCGTCTTCGTTTCCGGGCTTAACAAACGGACGACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGTGAAGTTGTTCGCACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGGTACGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAACATGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAATCTATCCCAGAACCTAGACAGCAATGTCCCCGGCATCTCCGGCAGTAG 417 0.5036 MALRAAAAIAAAQPSSRGLLRLLSSRSAYPPSTTAAVFARQAVEPKSSVFVSGLNKRTTSERLLQEFSKFGEVVRTRVMIDRTGCSKGYGFVQYATIEEAAKGIENMNGKFLDGWVIFVEYAKSIPEPRQQCPRHLRQ* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1128 138 PANTHER TRANSFORMER-2-RELATED 1 131 - -
Ahy18g1128 138 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Ahy18g1128 138 SMART rrm2_1 48 120 IPR003954 GO:0003676
Ahy18g1128 138 CDD RRM_SF 49 120 - -
Ahy18g1128 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 131 - -
Ahy18g1128 138 Gene3D - 32 137 IPR012677 -
Ahy18g1128 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 124 IPR000504 GO:0003723
Ahy18g1128 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 114 IPR000504 GO:0003723
Ahy18g1128 138 SMART rrm1_1 48 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1128 Ahy-Chr18 17500964 17503035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1128 31 129 Eukaryotic Initiation Factors Gene Family AT4G34110 33.000 5.71e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1128 - - adu:107488830 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1128 18 17500964 17503035 Ahy18g1128 18 17500964 17503035 ECH