LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g1080	ATGAAAATCCAACAATATTATTATATGGGTGTCATAAAGGCTAGCTTTTGCATTGTTTTGGTTCTTTATCTTGTGGGAGCAATTATTAGTCTTGAAGAAAAGAGGAAGCAAGAAGCACAAGAAGAACTCCTTATCCAACTATTTGATCCTAAATCTGAAATTTTTGATAAAGATACGGCAGAGTTATTATGGACTACTTGCTGGGAGGATTTGATTAAAATTGAAGATCTTGATTCATGCCCCATACAATCACCAAGTAACACGAATGAAATTAGTTTAGAAAGAGGAATAATAGCTCAAAGAAACATTGAAAATGTGATTAACAATTGCCAACCCCAATTGAGGGAAGGTTTCCTTGATTGCTTGAGAAGACACAATCCCCTCATCCATGTCTCAAAGAACAGTTTGCATGCAAGTTATGTGAGATTACTCTCTTCCAGAAGAAACTTGGGTCATGTTTTGCTCCAAGATGTGTCAAGAGCAGAAGATGTTGGAGATGAATCGGTGCAAACTAAAACTAAAACGGAAAACACTGCTCCAAAAGAGAGTGGAAGCGAACAAAATGTGTTTGTTATCGTAGGTATAACTGCAGTGTCATCATTTGGAATTGCAGCATTTGTTTTCATATTTTGTTGTAGATGTAGCAGAGCAAATGTTGATCAAACTGATGAGAAACCTCTTCTCAGCTTGTGTAGGACTGACTACTCCAATGGGTCCTTTAACAGTAGAAATCCTCCGCAGGAGTCAATGAAAAAAGAAGACAGCATTGAGACTCTTATGTCAAGTAAAATTTTATTCGATGACAATAAAAATAAAAACTTAGCGCATGAAATATATTCAATGCGATTAGCAGGACCGTATGAAATAAGTTCGGTAGGATTAGGAGGAGCTGATGCTTCTGTTGCCGCTTCGGCAAGACCATCAATGGACTTGAAACCTCCTCCCGGCAGGGTTGGACCACCGTTACCTTTGAAACCTCCTCCTGGAAGGCCAAATCCTCCCTCCGACCCACCAATTCCTCCTCCTTCCGCTGATGAAAATAATCCTCCTCTTCCGCCTCCTCCTGCTGCTGATGCTCCTCCTCCTCCTCCACCGCCAAAGCCGAGTAATGCTCCACCACCTCCTGCACCGCCACCGATTAGAGGTGGTGGGCCTCCGCCTCCTCCACCACCAGATGGAAAAGGCCCTCCACCTCCCCCTCCACCAGGTGTGAAAGGCCCAGGCCCAGGCCCTCCTCCACCACCAGCACTTAAGGGAGGAGGTGGTCCACGACCTCCTGGACCACCTCCTCTAAAAGGTGCGATTGGTGGGAAGGCTAGGCCTCCAGGACGAGGACCCGAAGGTCCTGGAGGTGTTCCCAAGCCAAAACTTAAGCCTTTCTTCTGGGATAAGGTTCAAGCAAACTCAGATCAGGCTATGGTTTGGAATCAGCTCAAAGCAGGATCCTTCCAGTTCAATGAAGAAATGATGGAGTCGCTTTTTGGATATAATGCTGCTCAAGAAAAATCTAAACCCGGAATGAAGAAAGAATCTCGTGAACAAACTCCTCAATATATTCAGATCATTGAACCAAAGAAAGCACAGAATTTGTCAATTCTGTTGAAAGCATTGAATGTAACACTAGAAGAAGTTCGTGATGCACTCCTTGAAGGAAATGAAATACCCCCAGAATTCCTAAACACTTTGTTGAAGATGGCCCCAAGTCAAGAGGAAGAACTAAAGCTCAGACTCTTCACAGGGGACCTACACATGCTTGGACCCGCTGACCGATTCTTGAAAGCCATTGTCGACATTCCATTTGCCTTCAAACGAATCGAAACACTACATTACATGTGCACTCTCTCTGATGAACTCATTACTACTAGAGATTCTTTTGGAGTTTTGGAGGTTGCATGTAATGAACTAAAAAGCAGCAGGCTATTCCTGAAGCTTCTAGAAGCGGTGTTGAAAACAGGAAACAGGATGAACGATGGAACATTCCGAGGCGGCGCGCAAGCATTCAAACTTGACACGCTGCTGAAGCTGTCTGATGTGAAAGGTGTAGACGGGAAAACCACGCTTCTTCACTTCGTGGTGCAAGAAATAATTAGAACAGAGGGCATAAGAGCAATGAGAATGTCAAAAGAGAGCCTAAGCTTTTCGAGCATAAAAACCGACGACCTTCTAGAAGATGTCAACTTAGAGAACGAAGACCAGTACCGGGACCTCGGTCTTAACGTGGTGTCCCGTCTGAGTAGTGAGCTTGAGAATGTCAAGAAAGCAGCGGCTCTGGATGTGGACGGTTTGATATCTACAACGGCCAGACTCGGCCACGGTCTTATAAAGGCCAGAGAATTTGTAAACACGGAACTTAAGACCCTGGAGGATGACCAGGGCTACTACGAAGTCACCAAGAGCTTCGTCGAGAGTGCGGAAGAGGGCGTCGCCAACTTGCTCCGTGAAGAGAAGAAGATCATGGCATTGATAAAGAGCACAGGTGACTACTTTCATGGCAATTCTGGCAAGGATGAAGGCTTGAGGTTGTTTCCGATAGTGCGTGATTTCTTGCTAATGTTGGATAAGGTTTGCAAAGAAATAAAGACTATACCAAAGAAACCACCACCGGCAGCAGCCGCACCGGCTCAGGCACAAGCACAATCACAAGCACAAGCACAAGCACAGGCAGCACCACCGGCGGCACCGGCATCAAATAATAATAATGAAAAACAGGAGAGTGGTAGTTCGAAAACTTCATCAGAGACACGCGCTGCTCCTCCGCCTCCTCCTATTTTTCGCAACCGACTTCCGGTAGTTGCAGAAAGGACGGGTGACTTTAGTTCGGACGATGACAGCCCATAG	2838	0.4531	MKIQQYYYMGVIKASFCIVLVLYLVGAIISLEEKRKQEAQEELLIQLFDPKSEIFDKDTAELLWTTCWEDLIKIEDLDSCPIQSPSNTNEISLERGIIAQRNIENVINNCQPQLREGFLDCLRRHNPLIHVSKNSLHASYVRLLSSRRNLGHVLLQDVSRAEDVGDESVQTKTKTENTAPKESGSEQNVFVIVGITAVSSFGIAAFVFIFCCRCSRANVDQTDEKPLLSLCRTDYSNGSFNSRNPPQESMKKEDSIETLMSSKILFDDNKNKNLAHEIYSMRLAGPYEISSVGLGGADASVAASARPSMDLKPPPGRVGPPLPLKPPPGRPNPPSDPPIPPPSADENNPPLPPPPAADAPPPPPPPKPSNAPPPPAPPPIRGGGPPPPPPPDGKGPPPPPPPGVKGPGPGPPPPPALKGGGGPRPPGPPPLKGAIGGKARPPGRGPEGPGGVPKPKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMMESLFGYNAAQEKSKPGMKKESREQTPQYIQIIEPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLNTLLKMAPSQEEELKLRLFTGDLHMLGPADRFLKAIVDIPFAFKRIETLHYMCTLSDELITTRDSFGVLEVACNELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAMRMSKESLSFSSIKTDDLLEDVNLENEDQYRDLGLNVVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKAREFVNTELKTLEDDQGYYEVTKSFVESAEEGVANLLREEKKIMALIKSTGDYFHGNSGKDEGLRLFPIVRDFLLMLDKVCKEIKTIPKKPPPAAAAPAQAQAQSQAQAQAQAAPPAAPASNNNNEKQESGSSKTSSETRAAPPPPPIFRNRLPVVAERTGDFSSDDDSP*	946

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy18g1080	945	PANTHER	FORMIN-RELATED	169	353	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Ahy18g1080	945	PANTHER	FORMIN-LIKE PROTEIN 3	169	353	-	-
	Ahy18g1080	945	MobiDBLite	consensus disorder prediction	305	458	-	-
	Ahy18g1080	945	PANTHER	FORMIN-RELATED	372	885	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Ahy18g1080	945	PANTHER	FORMIN-RELATED	13	139	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Ahy18g1080	945	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	447	878	IPR015425	-
	Ahy18g1080	945	MobiDBLite	consensus disorder prediction	313	432	-	-
	Ahy18g1080	945	MobiDBLite	consensus disorder prediction	874	914	-	-
	Ahy18g1080	945	Pfam	Formin Homology 2 Domain	453	852	IPR015425	-
	Ahy18g1080	945	PANTHER	FORMIN-LIKE PROTEIN 3	372	885	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g1080	Ahy-Chr18	16085822	16090087	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy18g1080	444	870	FH2 protein (formin) Gene Family	AT5G54650	63.972	0.0	559

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g1080	-		-	ahf:112772643	900.968

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g1080	18	16085822	16090087	Ahy8g1812	8	36356916	36361103	hybridization
	Ahy18g1080	18	16085822	16090087	Ahy13g1738	13	27679571	27686198	PCT
	Ahy13g1738	13	27679571	27686198	Ahy18g1080	18	16085822	16090087	PCT

Showing 1 to 3 of 3 entries