Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1018 ATGAGATATAGACAAAGACATTGTAGAAGAGAAGCAGTTAGAGTTTTCATCCAACTGCAATCCCTGCCATTCTCATCCCCTTCCTTTGCTGCAAATTTTCGCGACCTGTTTCTGCCGACGCGCCACGCCTCCCCACGCCTCCCACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTGCATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 423 0.461 MRYRQRHCRREAVRVFIQLQSLPFSSPSFAANFRDLFLPTRHASPRLPRSIRQEVSAALNRSTGSSGTRDHDSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1018 140 ProSiteProfiles Zinc finger RING-type profile. 88 127 IPR001841 -
Ahy18g1018 140 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 47 139 - -
Ahy18g1018 140 MobiDBLite consensus disorder prediction 57 78 - -
Ahy18g1018 140 Pfam Zinc finger, C3HC4 type (RING finger) 86 132 - -
Ahy18g1018 140 PANTHER PROTEIN, PUTATIVE-RELATED 47 139 - -
Ahy18g1018 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Ahy18g1018 140 SUPERFAMILY RING/U-box 87 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1018 Ahy-Chr18 14533338 14534632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1018 88 135 C3H Transcription Factor Family AT3G06140 37.500 4.58e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1018 - - ahf:112769613 298.516