Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0941 ATGGATGATGGAGAAGTTTCAAATGGTGCTTTCCCTCTTCATCACAACAACCAAACTCATGATCCAACTTCTAACAATCCTCCACCTTTGAAAAGGAAGAGAAACCTACCTGGAAACCCTGATCCTGAAGCTGAAGTGATAGCCTTGTCACCCAAGACTCTGATGGCGACAAACAGGTTCGTGTGCGAGATTTGCCTAAAGGGTTTCCAAAGGGATCAGAATCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAGAGAACAACAAAAGAAGTAAGGAAGAGAGTGTACGTGTGCCCGGAGAAAACCTGCGTCCATAACCACCCTTCAAGGGCCTTAGGAGACTTAACAGGGATCAAGAAGCACTTCTGCAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGCGTTATGCTGTACAATCAGATTGGAAAGCACACTCCAAAACCTGTGGTACCAGGGAATACAAATGTGACTGTGGAACCATCTTTTCACGGAGGGACAGTTTCATCACACACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAACGCAGCATCAACCATAAACCACACATTATTAGGTGCTAACAACATTGCTTACACCCTCATGCAGCAGCAAAATCATCATCCTTTGGTTCCTAATAACATGTCAACCCATTTCTCTTCAATTTTCAAGCCAATTTCTTCATCCACTACTGATGAAATAAGCAGCAATAGCCAAACATCTTCTAGACCCTTATCCCTTTGGAACATGGGTCATCACCCTCATGACACAACAACAATAATGCCAATTACTCACAACAATTTGCATGATATTCATCAGCAAATTGGATTTGCTACAAACCCTCCTCCACCATCAATTTGGATGTTTGGAAACAAACATCCCTCCAATGGAAGCCAGCAAGAGATAATAACTAGCACTACAAGTGCTAATTCACTTCCATTAATGAACATTGTCAAGAATAATAATAATAACAATAATAATAATAATAATAATAACAATAATAATCATGTTGCAAACCAGCTTGTAAGTGTTCCTTCGTTGTATAGCACCCAACACCAATCCCATGATCATGATCAAACAACAACAACATCTTCATCAGCAGCAAACATGTCAGCCACAGCTTTATTGCAAAAAGCGGCTCAAATTGGATCAACTTCTTCAACTGATCCATCATCATTTCTTGGGAGCATAGGTTTGAAATGCAGTAACAATAATAACCAAGGGCAAGATGGGAATAACAAATTTTGTGGGATTTACAGTTCAAGTTGGAGTGAGCCAGAGAGCTCCACGGGTGATTTGACACAAATGCCCCCTACAAAAAGAATGCGCGTGCAGAATGAAGATGGCAGTGCAGGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGCAAACCATTTGCCACCCTTCATCTATCACTGGCTGGATTTGATGATTTAA 1476 0.4173 MDDGEVSNGAFPLHHNNQTHDPTSNNPPPLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTTKEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTINHTLLGANNIAYTLMQQQNHHPLVPNNMSTHFSSIFKPISSSTTDEISSNSQTSSRPLSLWNMGHHPHDTTTIMPITHNNLHDIHQQIGFATNPPPPSIWMFGNKHPSNGSQQEIITSTTSANSLPLMNIVKNNNNNNNNNNNNNNNNHVANQLVSVPSLYSTQHQSHDHDQTTTTSSSAANMSATALLQKAAQIGSTSSTDPSSFLGSIGLKCSNNNNQGQDGNNKFCGIYSSSWSEPESSTGDLTQMPPTKRMRVQNEDGSAGGQTRDFLGVGANHLPPFIYHWLDLMI* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0941 491 PANTHER F-BOX ASSOCIATED PROTEIN 17 484 - -
Ahy18g0941 491 Gene3D Classic Zinc Finger 93 184 - -
Ahy18g0941 491 MobiDBLite consensus disorder prediction 11 30 - -
Ahy18g0941 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Ahy18g0941 491 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Ahy18g0941 491 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Ahy18g0941 491 MobiDBLite consensus disorder prediction 1 43 - -
Ahy18g0941 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 484 - -
Ahy18g0941 491 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0941 Ahy-Chr18 11914176 11917216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0941 24 476 IDZ Gene Family AT1G03840 50.605 1.13e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0941 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0941 K25870 - gmx:100778666 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0941 18 11914176 11917216 Ahy18g0941 18 11914176 11917216 ECH
Ahy18g0941 18 11914176 11917216 Ahy8g1689 8 34478783 34481915 hybridization