Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0931 ATGGCTTCGTTATTTAAGGATCCAGCGAAGCTTTCAGCTTATCGAGATAGAAGATTTCCCGGAAATCAGGAGGAGTTTGAGCATGCTCTGCAGACATCAACAACGGTTTATGTTGGAAATATGTCATTTTACACGACAGAGGAGCAAGTTTATGAGCTGTTTTCCCGAGCTGGAGAAATTAAGAAGATCATCATGGGCTTGGATAAGAACTCGAAAACACCCTGCGGCTTCTGTTTTGTTCTATATTACTCACGTGAAGATACAGAGGATGCTTGCAAATATATAAGTGGGACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGATTGGGGGTTCCAAGATGGAAGACAATGGGGCCGTGGTCGTAGCGGTGGCCAGGTTCGTGATGAATACCGAACTGATTATGATCCTGGTAGAGGTGGTTATGGGAAGTTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGACTATGGCGCTGGTTCTTTGGGTTCTTTCCCACCTGTTATTCCGCATTCATATGGTAGACATGGTGGAGGCCATGCCCATGCTCATGGTCATGGTGGATCCCATCGGCATGGTAGAGACTACCATAGGAAGAGATACAGAGATGATGACCGCCACCCTCCACATGAATCCTCAAAGAGAACATCAGATCATGAATCTCGGAGAAATGCTGACCCTGATTCTAGACCGGAAAAAAATCCACGATTTCGCGAGAGTGGTGATTCTGACGAGGATGAGGAAGATGATCGAAAGAGACGGGCTTAA 777 0.4569 MASLFKDPAKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPHSYGRHGGGHAHAHGHGGSHRHGRDYHRKRYRDDDRHPPHESSKRTSDHESRRNADPDSRPEKNPRFRESGDSDEDEEDDRKRRA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0931 258 CDD RRM_NCBP2 36 113 IPR034148 -
Ahy18g0931 258 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Ahy18g0931 258 SMART rrm1_1 35 108 IPR000504 GO:0003723
Ahy18g0931 258 MobiDBLite consensus disorder prediction 171 258 - -
Ahy18g0931 258 MobiDBLite consensus disorder prediction 180 200 - -
Ahy18g0931 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Ahy18g0931 258 Gene3D - 6 150 IPR012677 -
Ahy18g0931 258 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 211 - -
Ahy18g0931 258 MobiDBLite consensus disorder prediction 201 258 - -
Ahy18g0931 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Ahy18g0931 258 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 211 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0931 Ahy-Chr18 11768216 11771501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0931 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.848 6.92e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0931 K12883 - gmx:100776217 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0931 18 11768216 11771501 Ahy18g0931 18 11768216 11771501 ECH
Ahy18g0931 18 11768216 11771501 Ahy8g1680 8 34388407 34391769 hybridization