Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0920 ATGAGTATCTGTTCCGATCAGCAGCACCATCACAAGTTTTACCCTTCTCAACAACTCCTTTCTCCTAAGAAGTCCCTCAGAGATATTGACGTTCCACCAAGGAAGCTCCTCACCCGTCGAGCCGCCGCCGTCGACGCCGGTGAAATGTTCTCCGACGACACGCTTTTTCAGAAATTCCTCCCTTGCAACAACCCTGCTGACGATTCTGGCTCTGACGGCGACGACCCATACTCATCCGACCACTTCCGGATGTATGAGTTCAAGGTCCGCCGTTGCACTCGCAGCCGCAGCCATGACTGGACTGACTGCCCTTTTGCCCACCCAGGCGAAAAGGCCCGCCGTCGCGACCCGCGTCGGTATCACTACTCTGGAACGGTCTGTCCAGAATACCGCCGCGGCGCGTGCAGCCGTGGTGACAGCTGCGAGTTTGCACACGGCGTCTTTGAATGCTGGCTCCACCCTGCAAGGTACAGAACCGAAGCATGCAAAGATGGAAAGAACTGCAAGAGGAAAGTGTGCTTTTTCGCGCACACTCCGAAACAACTGAGGATCCTTCCAGTTACAATGAGTACTTCGAATGACATCTCTCCATGCAAGAAGAACAAGCTTTTCCTGAACCCTTCGTCAGGTTCTTCTAGTAACAATAGCTGCTGTTTGTTCTGCCACCACTGTGCCGGTGGTGGTGGTGCTGCTGCTGTTAATTCTCCAACTTCGACGCTTTTAGGCATGTCCCGTTTTTCGCCGCCGCTCTCACCATCGTCATCCGCCACGTCGCCGCCGGTTTCTCCGATTAGTAGGCTGTCCCGCTACGGTGCGTGTCGTGCTGGCGGTGGTGGTGGTGGTGGTGGTGCCAGTAACTTGAGTTACAAGGACGTGGTTAATGAATTGATGAGTTCTTTGGAGGGTTTGAGTTTCAGCGACGCTTTGAATTATAGCGACGTTTCAGGTGTTTCTGCTGCAAAAGTAGCAACTAACATGCCGTGGGTTGATGTTCCTCTGAATTGTGAGGATCAGCAAGAGTTTATTTTTTCTCCGTCTTCTCCAATGATGATGACCCCAACAAGAAGCTGTGATGATGATGGGAAATTTTCTAGGTTTTTTATTAGCAACGAAAACAAGGTGGTTGCTCATAAATCTAATTCCGATGCTAATATTTCTAATGATATTAATGGTGCGAATAATTGCCCAGCTCCTGATCTCGGATGGGTGAATGATCTTCTGATGTAG 1227 0.5069 MSICSDQQHHHKFYPSQQLLSPKKSLRDIDVPPRKLLTRRAAAVDAGEMFSDDTLFQKFLPCNNPADDSGSDGDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGACSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTMSTSNDISPCKKNKLFLNPSSGSSSNNSCCLFCHHCAGGGGAAAVNSPTSTLLGMSRFSPPLSPSSSATSPPVSPISRLSRYGACRAGGGGGGGGASNLSYKDVVNELMSSLEGLSFSDALNYSDVSGVSAAKVATNMPWVDVPLNCEDQQEFIFSPSSPMMMTPTRSCDDDGKFSRFFISNENKVVAHKSNSDANISNDINGANNCPAPDLGWVNDLLM* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0920 408 SUPERFAMILY CCCH zinc finger 120 150 IPR036855 GO:0046872
Ahy18g0920 408 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Ahy18g0920 408 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Ahy18g0920 408 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 407 - -
Ahy18g0920 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 146 IPR000571 GO:0046872
Ahy18g0920 408 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Ahy18g0920 408 PANTHER UNKEMPT FAMILY MEMBER 28 407 IPR045234 -
Ahy18g0920 408 Gene3D - 121 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0920 Ahy-Chr18 11499408 11501130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0920 74 183 C2H2 Transcription Factor Family AT5G07500 70.909 8.94e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy18g0920 zf-CCCH 3.20E-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0920 K23047 - gmx:100787049 422.935