Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0917 ATGGACCGGGGTGGTGGTGAAGACGCGCCGCTAGAGGCGAAGAGGGAGCCTAAGCCGGATGAAGATCATAATAATAATAAGAAGAAGAAGAAGAAGAAAGAAGTGCCGGTGACATGTGTTAGCGGGAAGAAAGGTTCCGGTGGCGGCATGCGGTGTTGTCAAGCTGAGAAGTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAAGGTGTGTGAGTACCATGCCAAGGCTCAGGTGGTTCTTGTTTCTGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGATAGGTGAATTTGATGACACAAAACGAAGTTGCCGGAGCCGTTTGGCCGGACACAACAAACGGCGAAGAAAGAACTCTGATTCTCAAGCAGAAGGGTCGAGGCGCAAAGGGATATGTCCTCGGTTGAAGAAGGACACTGCCTGTGGAGATGATAGGAGCAGAATTCAGATTGCAATCCAAGAGAGTGGAGCTTATAAACATTTCCAGATAAGATGA 522 0.4962 MDRGGGEDAPLEAKREPKPDEDHNNNKKKKKKKEVPVTCVSGKKGSGGGMRCCQAEKCKADLEEARQYHRRHKVCEYHAKAQVVLVSGIRQRFCQQCSRFHEIGEFDDTKRSCRSRLAGHNKRRRKNSDSQAEGSRRKGICPRLKKDTACGDDRSRIQIAIQESGAYKHFQIR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0917 173 MobiDBLite consensus disorder prediction 1 40 - -
Ahy18g0917 173 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Ahy18g0917 173 MobiDBLite consensus disorder prediction 124 138 - -
Ahy18g0917 173 Gene3D - 44 114 IPR036893 GO:0003677|GO:0005634
Ahy18g0917 173 Pfam SBP domain 53 126 IPR004333 GO:0003677
Ahy18g0917 173 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
Ahy18g0917 173 MobiDBLite consensus disorder prediction 1 28 - -
Ahy18g0917 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 36 173 - -
Ahy18g0917 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 173 IPR044817 GO:0003677
Ahy18g0917 173 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0917 Ahy-Chr18 11463805 11465055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0917 40 159 SBP-box Gene Family AT1G53160 56.000 2.02e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy18g0917 SBP 6.80E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0917 - - ccaj:109810441 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0917 18 11463805 11465055 Ahy18g1382 18 26016464 26017843 ECH
Ahy18g0917 18 11463805 11465055 Ahy18g0917 18 11463805 11465055 ECH
Ahy18g0917 18 11463805 11465055 Ahy20g0431 20 4355353 4356806 ECH
Ahy18g0917 18 11463805 11465055 Ahy13g3357 13 130693461 130695245 ECH
Ahy18g0917 18 11463805 11465055 Ahy8g1667 8 34167674 34168935 hybridization