Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0870 ATGCAGCTCCACCACCGTGTCACCGCCGTGTCAGTTTTGATATTTTGCTTCGGAGTGATGTTAGTTTGCGGCCAGAAACAACGGCCACAGCACCGCATCCTCGATCCACATTGGCATGCTGGCACCGCCACGTGGTACGGCGATCCCGAAGGAGACGGTAGCACCGGAGGGGCGTGTGGATATGGAACGATGGTGGATGTGAAGCCGTTGAAGGCGAGGGTGGGTGCGGTGGGGCCGGTGCTGTACAAGAACGGGGAAGGGTGCGGAGAATGCTACAAGGTGAAGTGCTTGGACCCAACCATATGCTCCAAGCGAGCGGTGACGGTTATAATCACGGACGAGTGCCCTGGTTGTCCCTCTGATCGAACCCACTTTGACCTCAGCGGTGCCGCATTTGGCCGAATGGCGGTTTCCGGCGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATATACCAAAGAACAACTTGCACATATCCAGGCAAAAACATTGCCTTCCGTGTCAATGAAGGTTCTACACCCTTTTGGCTATCACTCTTGGCAGAGTGGGAGGATGGAGATGGAGACATCAGCTCCATGCATATACAAGAAGTAGGGTCAAGTGAGTGGCTGGAAATGAAACATCTGTGGGGTGCAAATTGGTGCATCATTGCGGGTCCTTTAAGAGGACCTTTCTCAGTTAAACTAAGCACATCGTCAGGGAGAAGCCTCACTGCCAGGGATGTTATTCCAAGCAACTGGTCACCAAAAGCCACTTATACCTCTCGCTTGAATTTCATTCCTTAG 792 0.529 MQLHHRVTAVSVLIFCFGVMLVCGQKQRPQHRILDPHWHAGTATWYGDPEGDGSTGGACGYGTMVDVKPLKARVGAVGPVLYKNGEGCGECYKVKCLDPTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYQRTTCTYPGKNIAFRVNEGSTPFWLSLLAEWEDGDGDISSMHIQEVGSSEWLEMKHLWGANWCIIAGPLRGPFSVKLSTSSGRSLTARDVIPSNWSPKATYTSRLNFIP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0870 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Ahy18g0870 263 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Ahy18g0870 263 Pfam Expansin C-terminal domain 166 246 IPR007117 -
Ahy18g0870 263 SUPERFAMILY Barwin-like endoglucanases 35 163 IPR036908 -
Ahy18g0870 263 PANTHER EXPANSIN-B3 15 263 - -
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 233 250 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Ahy18g0870 263 Gene3D - 160 258 IPR036749 -
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Ahy18g0870 263 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Ahy18g0870 263 Pfam Lytic transglycolase 79 153 IPR009009 -
Ahy18g0870 263 PANTHER EXPANSIN-LIKE PROTEIN B1 15 263 - -
Ahy18g0870 263 SMART dpbb_1 74 154 IPR007112 -
Ahy18g0870 263 Gene3D - 24 159 IPR036908 -
Ahy18g0870 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 164 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0870 Ahy-Chr18 10433819 10436402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0870 10 199 Expansin Gene Family AT4G28250 64.583 6.06e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0870 K20628 - gmx:100780112 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0870 18 10433819 10436402 Ahy18g0870 18 10433819 10436402 ECH
Ahy18g0870 18 10433819 10436402 Ahy8g1630 8 33505590 33508220 hybridization