Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0749 ATGAGAGTAGTTATTGTTACAAGAATAAACCAATTCTTCATTGAAGTAGGTGCCCAAGAAACAGTTTCCGAGATCAAAAGAAAAATAGAACAAATTCATGGTACTCCAGCAGCTTCACAGATCCTAACAGTTTCTGGATGGGAACTAGTGGATGGCTTAGACATGGAAGACTATCCTATAGTCACTGAAGGTACAAAAATTGACCTCAATATCAAACCAAGCACAGAACCACATTTTAACCATGTTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAGAAGGATCAAGATAGAGGTGGACAGAACAGATACTGTTCGGAGCTTAAAGGAAAAAATCCACATAATTGACAGCACCCCCATCAAAAGAATGACACTAGTGTTTTCAGGGGTGGAGTTGAACGAAGATTTCAGAAAGCTAAGTGAGTATGGCATACGTGAGTCTTCTGAAATTGTTGTGTTCCTCAACACCATAACTAGGGCAAGAGATGAAGCTCCCTCAAGGAAGAAAAATTCTGCCTGTTGA 525 0.3905 MRVVIVTRINQFFIEVGAQETVSEIKRKIEQIHGTPAASQILTVSGWELVDGLDMEDYPIVTEGTKIDLNIKPSTEPHFNHVNKMQITVKFSARRIKIEVDRTDTVRSLKEKIHIIDSTPIKRMTLVFSGVELNEDFRKLSEYGIRESSEIVVFLNTITRARDEAPSRKKNSAC* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0749 174 CDD Ubl_ubiquitin_like 3 69 - -
Ahy18g0749 174 Pfam Ubiquitin family 10 73 IPR000626 GO:0005515
Ahy18g0749 174 Pfam Ubiquitin family 87 156 IPR000626 GO:0005515
Ahy18g0749 174 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 170 - -
Ahy18g0749 174 SUPERFAMILY Ubiquitin-like 76 157 IPR029071 -
Ahy18g0749 174 Gene3D - 84 156 - -
Ahy18g0749 174 Gene3D - 1 75 - -
Ahy18g0749 174 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 170 - -
Ahy18g0749 174 ProSiteProfiles Ubiquitin domain profile. 85 156 IPR000626 GO:0005515
Ahy18g0749 174 SMART ubq_7 85 156 IPR000626 GO:0005515
Ahy18g0749 174 SMART ubq_7 1 72 IPR000626 GO:0005515
Ahy18g0749 174 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Ahy18g0749 174 SUPERFAMILY Ubiquitin-like 10 75 IPR029071 -
Ahy18g0749 174 CDD Ubl_ubiquitin_like 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0749 Ahy-Chr18 8269230 8269864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0749 85 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 1.42e-06 43.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0749 18 8269230 8269864 Ahy18g0749 18 8269230 8269864 ECH