Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0710 ATGGTGCTTCATCCTCGTCCACGCCGTTCCAATGGGAACGACCAGCAGCCTGTAGCTGAAGCTGATGGCCGAGGCACCAGTGTTAACTATGCAGATATTCACACCATATCTTCTGATTCTGATTCTGATTCTGATTCTGATTCTATTGTATATTCAAATTCTAGTTACGAAGGATTGCTAGATAACTTCAATCAAGAACCAGGGTCAAGTAGTAGCAGTTGTGACACTTCTGATTATTATGAGCATGGAAAAAGGCAAAAGCCAAAGTTCAGTAATGCAAGAAGTTCTGACGTGAAAAATAGAGGACCAAATGATGTTGATAGAGTGGTGGACAATGCAGATATGAATGAATGCTCAATGATTCAGCAGGAATCAGTTCCCCATGATTTGACTGGAACTAAAAAGAAGAAAAATAGAAAAAAAGGAAAAGGGAAAAAGCCAAAGCTGCTATGGCAAGTATGGGAAAATAACCAAGAAAGATGGATTGATGAGAATTTATCGGAAGATGCTGACTTAGATAATCAGAATGAAGTATTGACAGAAACTGCTGAGGCATCTTCTGATCTGACTATGCCTTTACTTAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGATACTAGAGGTGGCATCCTTGCAGATGAAATGGGAATGGGAAAGACTATTCAAGCAATAGCACTTGTCCTTGCCAAACGTGAATTGATGCAAAGTAGTTCTGCACCAGCTGAACCCATACTATCGCATTCACCTTCTTTATCTGGAATCTTGCCTGCGGTCAAAGGAACACTTGTCATTTGTCCTGTTGTCGCTGTTACTCAGTGGGTTAATGAGATTGATCGGTTTACCATCGAAGGAAGCACCAAGGTGCTCGTTTATCATGGGGCAGGGAGAGGGAAGAGTATTGAACAGTTCTTGGATTATGATTTTGTGATAACTACGTACTCTACTGTTGAGTCTGAGTACAGGAAGTTTATGATGCCTCCTAAGGAAAAACAATCAAGGCAAGTTAAGAAGAAAACAGAAGTCACTAGAGGGATGGACAAAGAAGGTGTGAGTAAGATGTCTTGTAGTGAAAAGAAACTGAGCATGGACGCAGAAGATGCAAATGCTACACACAGGGGTATGTCACTTCTTCATGCTGTTAAATGGCTGCGGATTATATTGGACGAGGCTCACTACATAAAGTCCAGACATAGTAACACAGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCTTTAAGTGGCACTCCCATTCAGAACCGTGTTGGAGAGCTGTACTCTCTTGTACGGTTCCTGCAAATAACTCCGTATTCATTTTACTTGTGCAAGGACTGTGATTGCAGGACCCTTGATCACAGCTCCATACAATGTCCAGACTGCAGCCACAGTTCAGTTAGACATTTCTCTTGGTGGAATAAATATGTTTCCACACCAATTCAATCCTCTCTAAGTAGCTATGGGCGGGGTAAAAGAGCTATGATCTTGCTTAAACACAAAGTTCTGAAGAACATACTACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGAATTGTCTCACTGAGAAGGGATTGTCTGGATATAAAAGAGCAAGACTATTATGAGTCATTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAATCTAATACACTGATGAATAATTATGCTCATATATTTGATCTTCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCGGCACGACAAGGTGGCCATGTGGCTAGTAATGCTACTGCTGAACAAGCATGTGGCCTTTGTCGTGAACCAGTGGAAGATCCTGTGCGAGAAGAAATAAGATCTATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTAATAAACTTCTCTTTGAATAAGTCTGGGGTATCTTGTGTTCAATTGAATGGAAATATGACAATGAGTGCCCGAGATGCTGCCATTAAGAGGTTTACCAATGATCCAGACTGCAGGATTTTTCTCACGAGCCTGAAGGCCGGAGGCGTTGCACTCAATTTGACTGTAGCATCACATGTTTTCCTTATGGATCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGACAATTTAAACCTATAAGAATTGTGAGATTTATAATTGAGAACACTGTTGAGGAGAGGATTTTGAATCTGCAACAGAAGAAGGAACTAGTGTTTGAAGGGATTATAGGTGGCTCTTCTGATGCTCTGGGAAAACTGACGGAGGGAGACTTGAAATTTCTATTTGGTACATAG 2376 0.4175 MVLHPRPRRSNGNDQQPVAEADGRGTSVNYADIHTISSDSDSDSDSDSIVYSNSSYEGLLDNFNQEPGSSSSSCDTSDYYEHGKRQKPKFSNARSSDVKNRGPNDVDRVVDNADMNECSMIQQESVPHDLTGTKKKKNRKKGKGKKPKLLWQVWENNQERWIDENLSEDADLDNQNEVLTETAEASSDLTMPLLRYQKEWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKRELMQSSSAPAEPILSHSPSLSGILPAVKGTLVICPVVAVTQWVNEIDRFTIEGSTKVLVYHGAGRGKSIEQFLDYDFVITTYSTVESEYRKFMMPPKEKQSRQVKKKTEVTRGMDKEGVSKMSCSEKKLSMDAEDANATHRGMSLLHAVKWLRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPIQNRVGELYSLVRFLQITPYSFYLCKDCDCRTLDHSSIQCPDCSHSSVRHFSWWNKYVSTPIQSSLSSYGRGKRAMILLKHKVLKNILLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAAARQGGHVASNATAEQACGLCREPVEDPVREEIRSMVERDGSAKGIVFSQFTSFLDLINFSLNKSGVSCVQLNGNMTMSARDAAIKRFTNDPDCRIFLTSLKAGGVALNLTVASHVFLMDPWWNPAAERQAQDRIHRIGQFKPIRIVRFIIENTVEERILNLQQKKELVFEGIIGGSSDALGKLTEGDLKFLFGT* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0710 791 MobiDBLite consensus disorder prediction 30 77 - -
Ahy18g0710 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 624 781 IPR001650 -
Ahy18g0710 791 Pfam Helicase conserved C-terminal domain 635 735 IPR001650 -
Ahy18g0710 791 CDD DEXDc_SHPRH-like 193 516 - -
Ahy18g0710 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 516 IPR027417 -
Ahy18g0710 791 PANTHER - 134 337 - -
Ahy18g0710 791 PANTHER - 380 627 - -
Ahy18g0710 791 MobiDBLite consensus disorder prediction 78 108 - -
Ahy18g0710 791 PANTHER - 628 788 - -
Ahy18g0710 791 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 628 788 - -
Ahy18g0710 791 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 380 627 - -
Ahy18g0710 791 SMART ultradead3 189 461 IPR014001 -
Ahy18g0710 791 Gene3D - 538 789 IPR027417 -
Ahy18g0710 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 443 IPR014001 -
Ahy18g0710 791 CDD SF2_C_SNF 625 746 - -
Ahy18g0710 791 Gene3D - 163 535 IPR038718 -
Ahy18g0710 791 SMART helicmild6 652 735 IPR001650 -
Ahy18g0710 791 MobiDBLite consensus disorder prediction 1 108 - -
Ahy18g0710 791 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 134 337 - -
Ahy18g0710 791 MobiDBLite consensus disorder prediction 122 146 - -
Ahy18g0710 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 790 IPR027417 -
Ahy18g0710 791 Pfam SNF2-related domain 207 591 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0710 Ahy-Chr18 7517635 7524575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0710 623 791 RAD5 or RAD16-like Gene Family AT1G05120 79.882 4.17e-88 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy18g0710 SNF2_N 5.80E-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0710 K15083 - gmx:100786366 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0710 18 7517635 7524575 Ahy18g0710 18 7517635 7524575 ECH
Ahy18g0710 18 7517635 7524575 Ahy8g1502 8 31565559 31572556 hybridization