Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0680 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAACCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACGAATCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTATTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAGTCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTGATCTCCGAAGCGAAGCGATTCCCGGAGACTAAGGAGAATTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCGAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAAGAACAACAATCGCGCCGAAGAAGAAGAACGAGATCTAACTGAAGCTGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTAGTTCAAGAGATGATGCAGGTAGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGAGCTAAAGAGATTCTCAAGTTGCATTCTCTGATTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1236 0.4749 MDNEIEVPAHFLCPISLQLMRDPVTVCSGITYDRENIEKWLFSCKNESCPVTKQSLIQHTDLDLILTPNHTLRRLIQSWCTVNASLGVERIPTPKPSMDASSHIAKLISEAKRFPETKENCLATLRSMAFFERNKSCFESSGAIEFLATIMMKNNNRAEEEERDLTEAAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKEILKLHSLIWKNSTCIPLPLLSSYP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0680 411 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Ahy18g0680 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Ahy18g0680 411 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Ahy18g0680 411 CDD RING-Ubox_PUB 11 54 IPR045210 -
Ahy18g0680 411 PANTHER WDSAM1 PROTEIN 6 411 IPR045185 GO:0061630
Ahy18g0680 411 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Ahy18g0680 411 Coils Coil 151 171 - -
Ahy18g0680 411 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
Ahy18g0680 411 PANTHER OS11G0573500 PROTEIN 6 411 - -
Ahy18g0680 411 Gene3D - 231 390 IPR011989 -
Ahy18g0680 411 SUPERFAMILY ARM repeat 104 217 IPR016024 -
Ahy18g0680 411 Gene3D - 96 226 IPR011989 -
Ahy18g0680 411 SUPERFAMILY RING/U-box 5 84 - -
Ahy18g0680 411 SUPERFAMILY ARM repeat 195 376 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0680 Ahy-Chr18 7038080 7039878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0680 1 411 U-box Gene Family AT2G35930 52.885 3.65e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0680 - - gmx:100778012 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0680 18 7038080 7039878 Ahy18g0680 18 7038080 7039878 ECH
Ahy18g0680 18 7038080 7039878 Ahy8g1476 8 31143490 31145276 hybridization
Ahy18g0680 18 7038080 7039878 Ahy13g1335 13 16293596 16295152 PCT
Ahy13g1335 13 16293596 16295152 Ahy18g0680 18 7038080 7039878 PCT