Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0679 ATGGCGGAAATCGAAGTTCCTGAGTTGTTGCTGTGTCCCATCTCGCTTGAGATAATGAAGGACCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATAGAAGAATGGCTGCAGCAGAAATCTAATAAGAAGGATTGTATGTGTCCTGTTACAAAGCAACCATTGCCGACGGACTCTCATTTCTTGACTCCAAACCACACCCTCCGGAGGTTCATCCAAGCCTGGTGTTCAGCCAACGAATCCAACGGCGTCGATCGGATTCCCACCCCCAGGTCCCCTCTCGACAACTCCCAACTTCACAAACTCCTCACAGATCTTGATGCTCCTCGCACCTTTCAAACCTCATTGAACAAGATGCATGATCTAGCCACTCAGAGCCAGAGGAACCGCAACTTCATGGCTCAACAACGAGTACCCAAGGCCATGGTACAATTCATCACAACCACTTTCAAACAAGGCAAAACCAGCGGCGTTGAAGAAGCTCTGAGAATTCTTCGCTTACTATGGAGGAGCACTTCATCATCATCATCATCGTCATCCTCGCCAACTGGCGGCGGCGGCGGCACAAACATGAAGCCCCTGGTAGGTGAAACCTTGGACTTCATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAATCGACAATGACCTTAACATGGTTAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACGCTCTTGGGAAGCTTAAACCACGAGTTCTTCAAACAAATCGTGAGCACCATGACGAGACTAAGCAAATCATCATCATCAATTCACCAAAATGCCCTCAAATCCGCGTTACACGTGCTCATAGAAACATGCCCCTTAGGAAGAAACAGAACGAAGATCGTGGAATCCGGTGCAGTTGGCGAACTCATCGAACTGTCCATCGATAAACCAACGGAGAAGAACCTAACGGAGCTTATATTCAAGCTGTTGGGTCAACTGTGCTCGTGTGCAGAAGGGAGAGAAGAGTTTTTGAAGCACCCGGCCGGAATCGCTGTTGTTTCGAAGAGGACGCTGAGGGTATCGGCAGCGACTGATGATCGAGCCCTTCATGTGTTATGGCTGATTTCAAAGTTTTCAGCTACGAATGAGGTGGTTCGAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAACAAAAGGCAACAGATATTCTTAGGTTTCATGCAAAGGCTTGGAATAATTCTCCTTGTATTCAAGTCTATTTGTTAACTAGACACCCAAGATGA 1302 0.4693 MAEIEVPELLLCPISLEIMKDPVTTVTGITYDRESIEEWLQQKSNKKDCMCPVTKQPLPTDSHFLTPNHTLRRFIQAWCSANESNGVDRIPTPRSPLDNSQLHKLLTDLDAPRTFQTSLNKMHDLATQSQRNRNFMAQQRVPKAMVQFITTTFKQGKTSGVEEALRILRLLWRSTSSSSSSSSSPTGGGGGTNMKPLVGETLDFIKSLTWILQLPIIDNDLNMVNEAMQILKLTIEITDSTLLGSLNHEFFKQIVSTMTRLSKSSSSIHQNALKSALHVLIETCPLGRNRTKIVESGAVGELIELSIDKPTEKNLTELIFKLLGQLCSCAEGREEFLKHPAGIAVVSKRTLRVSAATDDRALHVLWLISKFSATNEVVREMLRVGAVSKLCMVMQADCASYLKQKATDILRFHAKAWNNSPCIQVYLLTRHPR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0679 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Ahy18g0679 433 SUPERFAMILY RING/U-box 4 87 - -
Ahy18g0679 433 SUPERFAMILY ARM repeat 220 411 IPR016024 -
Ahy18g0679 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 432 - -
Ahy18g0679 433 Gene3D - 100 420 IPR011989 -
Ahy18g0679 433 PANTHER WDSAM1 PROTEIN 1 432 IPR045185 GO:0061630
Ahy18g0679 433 SMART Ubox_2 9 78 IPR003613 GO:0004842|GO:0016567
Ahy18g0679 433 ProSiteProfiles U-box domain profile. 5 85 IPR003613 GO:0004842|GO:0016567
Ahy18g0679 433 Pfam U-box domain 6 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0679 Ahy-Chr18 7024142 7034810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0679 3 432 U-box Gene Family AT2G35930 39.261 8.24e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0679 - - adu:107461999 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0679 18 7024142 7034810 Ahy18g0679 18 7024142 7034810 ECH
Ahy18g0679 18 7024142 7034810 Ahy8g1475 8 31137915 31140039 hybridization
Ahy18g0679 18 7024142 7034810 Ahy13g1334 13 16214671 16217293 PCT
Ahy13g1334 13 16214671 16217293 Ahy18g0679 18 7024142 7034810 PCT