Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0574 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGTGAGATTGTTAAAGTAGACAACAAGGAATCAGATGTCTGCATACACCTTTCTCAGGTTGCTCTTGGTGAGTCCAAGAAGGACAAACCCAGTGAGCCTGTGGTTGTTTATTTGAAAGTTGGAGAACAGAAATTTGTTGTGGGAACTCTTAACAAGGAGAAGTTTCCTCAAATTGCTCTTGATTTGGTTGTTGAGAAGGAGTTTGAGCTTTCCCACACTTCCAAGAACGCCAGTGTCCACTTTTGTGGATACAAGACATCTGTCGCTGATGATGAGGAGGATGATTTTTCAGACGATAGTAGCGATGAGGATCATCCATTGCCAGTTGCACAAAATGGAAAAACTGAAGTAAAAGTTGAGGAAGTAAAGGTTTCTCAATCTAAAAAATCTGATGCTCAGGCTGGTGCATCAAAACAAGTGAAGGTAGTTGAACCAAAGAAAACAGAGGATTCAGACGATGAATCTGATGAGGATGATGAAATGGACAGTTCAGATGAAGAGATGGAGGATGGCGAGAGTGATGAGGAGGGTGAAAGTGATGATGATGATGATGAGGAAGATACCCCACCCAAGAAGGTGGACCAAGGAAAGAAGAGGCCAAATGAATCTGCGACAAAAACTCCTATTTCTAACAAGAAAGCAAAAAATGCTACCCCTGAAAAGACCGATGCTAAGAAAGGTGGCCATACAGCAACTCCTCACCCAGCAAAGAAGGGTGGAAAGACTCCAAACAGTGATGGCAAGGACACTCCCAAATCTGGTGGACAATTCCTCTGCAAAAGTTGCAACAAGAATTTCAATTCTGAAACTGGTCTCCAGCAACATAGCAAGGCTAAGCATGGTCAGTGA 879 0.4312 MEFWGAEVKVGEIVKVDNKESDVCIHLSQVALGESKKDKPSEPVVVYLKVGEQKFVVGTLNKEKFPQIALDLVVEKEFELSHTSKNASVHFCGYKTSVADDEEDDFSDDSSDEDHPLPVAQNGKTEVKVEEVKVSQSKKSDAQAGASKQVKVVEPKKTEDSDDESDEDDEMDSSDEEMEDGESDEEGESDDDDDEEDTPPKKVDQGKKRPNESATKTPISNKKAKNATPEKTDAKKGGHTATPHPAKKGGKTPNSDGKDTPKSGGQFLCKSCNKNFNSETGLQQHSKAKHGQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0574 292 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Ahy18g0574 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 292 IPR013087 -
Ahy18g0574 292 MobiDBLite consensus disorder prediction 160 198 - -
Ahy18g0574 292 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 288 - -
Ahy18g0574 292 MobiDBLite consensus disorder prediction 256 292 - -
Ahy18g0574 292 MobiDBLite consensus disorder prediction 226 240 - -
Ahy18g0574 292 MobiDBLite consensus disorder prediction 100 292 - -
Ahy18g0574 292 Gene3D Nucleoplasmin core domain 1 101 - -
Ahy18g0574 292 SUPERFAMILY beta-beta-alpha zinc fingers 261 289 IPR036236 -
Ahy18g0574 292 Gene3D Classic Zinc Finger 254 292 - -
Ahy18g0574 292 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 288 - -
Ahy18g0574 292 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0574 Ahy-Chr18 5623343 5625881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0574 1 109 C2H2 Transcription Factor Family AT5G03740 50.459 4.91e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0574 NPL 7.20E-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0574 - - gmx:100792094 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0574 18 5623343 5625881 Ahy18g0574 18 5623343 5625881 ECH
Ahy18g0574 18 5623343 5625881 Ahy8g1382 8 29967546 29970179 hybridization
Ahy18g0574 18 5623343 5625881 Ahy13g0247 13 2514343 2516415 PCT
Ahy13g0247 13 2514343 2516415 Ahy18g0574 18 5623343 5625881 PCT