Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0542 ATGATTTCAACAAGTATCGAACGAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGCTTCTTCTTCTTCATCTACAGCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTCGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATAGTTACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATATTAGAGGTCATGGCCATGGTTTCTTTTCTAGTACTACTGATTCTGAGGCACTGGATAATTGGCTAGGTGAAAGCTATAACAATACTGGTGTTGATTGTAAGGTTAATAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATACCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGAGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAGGGGTTCAAGCGCGATGCGAATTTGAGGATGCACATGAGAGCTCATGGGGATGAATACAAAACGAGTGCCGCATTGAGTAACCCTTTGAAGCAGAACAATAACGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1185 0.4363 MISTSIERNQGLMMQMFPTPPPPPGSEDLVSQQSMEIVNNSSVASSSSSTASSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIVTATSMMFTCQQIALAFPPPPPPPPPPGTIATTVAFANNHHELHQQHQRLLINNNNNNIRGHGHGFFSSTTDSEALDNWLGESYNNTGVDCKVNNNNDDDDPSVEISDTKEGAKKLDIIELDAEDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0542 394 SUPERFAMILY beta-beta-alpha zinc fingers 237 264 IPR036236 -
Ahy18g0542 394 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 388 IPR044300 GO:0010044|GO:0010447
Ahy18g0542 394 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Ahy18g0542 394 Gene3D Classic Zinc Finger 326 376 - -
Ahy18g0542 394 SMART c2h2final6 290 323 IPR013087 -
Ahy18g0542 394 SMART c2h2final6 239 261 IPR013087 -
Ahy18g0542 394 SMART c2h2final6 328 350 IPR013087 -
Ahy18g0542 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Ahy18g0542 394 PANTHER OS08G0562300 PROTEIN 33 388 - -
Ahy18g0542 394 MobiDBLite consensus disorder prediction 10 29 - -
Ahy18g0542 394 Gene3D Classic Zinc Finger 217 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0542 Ahy-Chr18 5284701 5287416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0542 31 380 C2H2 Transcription Factor Family AT5G22890 47.309 2.27e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0542 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0542 - - gmx:100802769 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0542 18 5284701 5287416 Ahy18g0542 18 5284701 5287416 ECH
Ahy18g0542 18 5284701 5287416 Ahy8g1348 8 29613769 29616240 hybridization
Ahy18g0542 18 5284701 5287416 Ahy13g0274 13 2784535 2785803 PCT
Ahy13g0274 13 2784535 2785803 Ahy18g0542 18 5284701 5287416 PCT