Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0541 ATGGAGATGGAATTAGGCATAGGCACGGAAGAGTTTCTTAACGATGCTTCCCACATCGCCAAGGGAAAGCGCACCAAGAGGCACAAACCCTTCTCCCCTTGCGACGTCGCCGCCATCACTTCCAGCTCCTCAAGCGCCAACGACTCTGCTTCCTTCTCTTCCACCACCACCTTTCAAGACGAAGAACAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAACAGGCGGAGAAGAAACCGATGATGATGAAGAAGATAACAAGATGAGAGAGAAGAGCAGAAGAATATCGGAGGTCACGACAACCGCAACTACAAAAATCGGTTTCTACATCTATGAATGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGCCACAGGGCCAGCCATAAAAAGCCAAAGGTCACATCAGATGATAAAAAGAAACCGCAACCGCAACTACAACCACAACCACAACCAAATACTTTGGCGCTAATCACAAATTGCGACTTTGAAGAAACAAAGCAAGCACGTGTGATGACAACAAGCCCTCCAATTTCCCTTCAATTGGGATATGGTGGTGCTAGCAACAACAATAACGGCAAGCCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCTCTTGGTGGTCACATGAGGAGGCATAGGACAGCTGTCATCACTACTACTAGTCCTCAGCCAACTTGTGACTTACCTGCCACGCTGGAGGTCGTTAAGCGGCCGCGGAATCTTCTGGAATTGGATCTTAACCTTCCGGCGCCGGCCGACGACGACCACCACCACCGGGATTCCCAGTTTCAATTCTCGTCCACACAGAAAACCATGATGCTTTCTGCTGCACCGCCTTTGGTGGATTGTCATTATTAA 903 0.4828 MEMELGIGTEEFLNDASHIAKGKRTKRHKPFSPCDVAAITSSSSSANDSASFSSTTTFQDEEQDMANCLILLAQGKTGGEETDDDEEDNKMREKSRRISEVTTTATTKIGFYIYECKTCNRTFPSFQALGGHRASHKKPKVTSDDKKKPQPQLQPQPQPNTLALITNCDFEETKQARVMTTSPPISLQLGYGGASNNNNGKPKIHECSICGSEFTSGQALGGHMRRHRTAVITTTSPQPTCDLPATLEVVKRPRNLLELDLNLPAPADDDHHHRDSQFQFSSTQKTMMLSAAPPLVDCHY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0541 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 227 IPR013087 -
Ahy18g0541 300 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 300 - -
Ahy18g0541 300 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Ahy18g0541 300 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Ahy18g0541 300 Pfam C2H2-type zinc finger 205 229 - -
Ahy18g0541 300 Pfam C2H2-type zinc finger 114 139 - -
Ahy18g0541 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Ahy18g0541 300 SMART c2h2final6 114 136 IPR013087 -
Ahy18g0541 300 SMART c2h2final6 205 227 IPR013087 -
Ahy18g0541 300 MobiDBLite consensus disorder prediction 130 160 - -
Ahy18g0541 300 PANTHER ZINC FINGER PROTEIN ZAT5 14 300 - -
Ahy18g0541 300 SUPERFAMILY beta-beta-alpha zinc fingers 113 227 IPR036236 -
Ahy18g0541 300 Gene3D Classic Zinc Finger 112 227 - -
Ahy18g0541 300 MobiDBLite consensus disorder prediction 74 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0541 Ahy-Chr18 5266612 5268280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0541 5 300 C2H2 Transcription Factor Family AT2G28200 41.463 5.41e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0541 zf-C2H2_6 4.20E-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0541 - - aprc:113858527 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0541 18 5266612 5268280 Ahy18g0541 18 5266612 5268280 ECH
Ahy18g0541 18 5266612 5268280 Ahy19g2334 19 137443075 137444714 ECH
Ahy18g0541 18 5266612 5268280 Ahy13g0276 13 2797332 2798735 ECH
Ahy16g1696 16 59206202 59207612 Ahy18g0541 18 5266612 5268280 ECH
Ahy12g3028 12 119827169 119828313 Ahy18g0541 18 5266612 5268280 ECH
Ahy18g0541 18 5266612 5268280 Ahy8g1347 8 29563132 29564352 hybridization
Ahy18g0541 18 5266612 5268280 Ahy13g0276 13 2797332 2798735 PCT
Ahy13g0276 13 2797332 2798735 Ahy18g0541 18 5266612 5268280 PCT