Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0538 ATGGATGCTCACCAAGAAACACTGATATTCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGCTCATCAATTTAATTAGAGGGGATAATAATAATGAAGATGATGCTGCTGTGTTCTTTAACTATGGTTCAGACATTATCATCAATGATTGCTTCCTTGATGATAATCAGAATCAGAATGATTTACTTCTTCCATGCCCTACTACTGCCCATAACCCATATGATCAGATTCATCAGAGCCATAACAACAATAGTAGCAATGAAGTGATGATGAATAATGTGTGTGATACTAATCTTATTAGCTCCTTCTCTTGCTTTGATGAAGGGGTGGTTAATAGAGAAAATGAAGGAGAGTATTCTTCTGCAACCACAACTGCAACTGATGAGGCTAATCTTAGTGGTAAACCAAGGGTGAAAGCTGATAGGTCCAAGACTCTCATCTCTGAGAGGAGGAGGAGAAGCAGAATGAAGGAGAAGCTTTATGCACTCCGCTCTTTGGTCCCTAACATAACAAAGATGGATAAGGCATCGATCATTGGAGATGCATTATCGTACGTGCATGAGCTTCAAGCACAAGCTAAGAAGCTCAAGGCTGAGGTTGCAGGACTTGAAGCATCTCTGTTTGTGTCAGAGAATTATAAAGCATCCTTTGATGACAATTACATAAAAACTGTTCAAGTCACACACAATAGCCACCCGATCAACAAGAAGATAGTGCAGATAGAGATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCAACAAAGGAGGAGGAGTTGCTGCATCACTCTACAGGGCTCTCGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCGAACTTTGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGGCTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTATGGGTGACAGGCGCTCTTCTCAACCAAGGCTTTGAATTCATGGGAAATTTTCATTATTGA 1017 0.4012 MDAHQETLIFNNDYEVHDFTEDPNFDQLINLIRGDNNNEDDAAVFFNYGSDIIINDCFLDDNQNQNDLLLPCPTTAHNPYDQIHQSHNNNSSNEVMMNNVCDTNLISSFSCFDEGVVNRENEGEYSSATTTATDEANLSGKPRVKADRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDALSYVHELQAQAKKLKAEVAGLEASLFVSENYKASFDDNYIKTVQVTHNSHPINKKIVQIEMVQVEERGYYVKIVCNKGGGVAASLYRALESLVGFSVRNSNFETVCDTILLTFTLNVKGFEPEVNLPNLKLWVTGALLNQGFEFMGNFHY* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0538 338 Coils Coil 192 212 - -
Ahy18g0538 338 MobiDBLite consensus disorder prediction 122 148 - -
Ahy18g0538 338 MobiDBLite consensus disorder prediction 122 137 - -
Ahy18g0538 338 Pfam Helix-loop-helix DNA-binding domain 153 196 IPR011598 GO:0046983
Ahy18g0538 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Ahy18g0538 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 334 - -
Ahy18g0538 338 SMART finulus 152 201 IPR011598 GO:0046983
Ahy18g0538 338 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 334 - -
Ahy18g0538 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 215 IPR036638 GO:0046983
Ahy18g0538 338 Gene3D - 140 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0538 Ahy-Chr18 5228734 5230522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0538 12 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.848 2.42e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy18g0538 HLH 1.60E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0538 - - aip:107612257 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0538 18 5228734 5230522 Ahy18g0538 18 5228734 5230522 ECH
Ahy18g0538 18 5228734 5230522 Ahy8g1344 8 29535775 29537154 hybridization