LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g0501	ATGGGTTTTGGTAATTCAAGATCTGTAAGATTTGAAGATGATCTGGAGCTACCAAATAAAAAGAGTGAAAGTAACAATGGTATGAAGGTCAAATACCACATTGATGGAACACAAATAGCAGAGGCTAGTTCCAACAAAAAGGCAGGGAATAAGTTCTTGAAAGGTAGAGTTTTATCAAGAGTGTTCTCAGAGGATTATGAGAGAGTTAAAAGAAGAAAAATAATCTTAGATCCTCGCGGCCAAGCGATCCACAGGTGGAACAAGATCTTCTTGGTGGCAAGCTTGGTGTCTTTGTTTGTGGACCCTTTGTTCTTCTACTTGCCAGTGGTTCAAGATGAAGTGTGCATTGACATTGGAGTAACACTTGAAGTTGCCCTTACTTTGATAAGAACAGTTGGTGATGCCTTCTATGTGATTCAGATTTTCGCCAAGTTTCGCACTGCTTATGTAGCTCCTTCTTCAAGAGTTTTTGGAAGAGGTGAACTTGTCATAGACACTTCCAAGATTGCAGTTAAGTACCTTTTCAAGGGATTTTGGTTAGACTTTCTTGCTGCCCTGCCTATTCCTCAGGTGCTAATTTGGATTATTATCCCAACTCTTAGGGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGGTTTTTCATCATCTTCCAATATGTTCCAAGGCTATATTTGATTTTCCCACTCTCTTCACAAATTGTAAGTGCTACTGGGGTTGTCACAGAAACAGCATGGGCTGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTACCTTCTGTCAATAGAAAGGCAAGAAGCATGTTGGAGAAATGTATGCAATGTTGAGAAGCCATTTTGTGAATATGCATTCTTTGACTGCCGCAGGGTTGGAAATTCCAAAAGAGACTTATGGTTTCTAGCAAGTAACATCACAAACCTATGCTCACCAGATTCTAACTTCTATCAGTTTGGTATATATGCTGATGCTGTCACTTCTCAAGTTACATCCTCATCATTCTTCAACAAGTACTTCTTTTGTCTTTGGTGGGGCCTTAGGAATCTCAGTTCATTAGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATTATGGTTGCCATTGTTGTTGCAACACTTGGATTGGTTCTTTTTGCATTACTCATTGGTAATATGCAGACATACCTGCAATCAACTACTGTGCGATTAGAAGAGTGGAGGGTGAAAAGAACAGACACAGAACAATGGATGCATCACAGGCAACTACCACAAGAACTTAGACAATCTGTGCGAAAATATGATCAATACAAATGGATGGCTACTAGGGGAGTTGATGAAGAAGCTCTTCTCAAAGGTCTTCCATTAGATCTTCGTAGAGACATCAAGCGCCACCTTTGTCTTGACCTTGTTCGAGGAGTACCATTGTTTGACCAAATGGATGAGAGCATGCTAGATGCAATATGTGAAAGACTAAAACCAGCATTATGCACTGAAGGAACCTACCTTGTAAGAGAAGGGGATCCAGTGAATGAAATGCTGTTCATAATAAGAGGGCACCTTGACTCTTACACAACCAATGGTGGCAGAGCTGGATTCTTCAACTCATGCCGTATTGGGCCTGGTGATTTCTGTGGGGAGGAGCTTCTAACTTGGGCCTTGGATCCAAGGCCCAGTGTTATTCTCCCTTCTTCAACAAGAACTGTTAAGGCCTTCTCAGAAGTTGAGGCTTTTGCACTCATTGCTGAAGATCTTAAATTTGTTGCATCTCAGTTTAGAAGGCTGCATAGTAAGCAACTTAGGCACAAGTTCAGATTCTATTCACACCAATGGAGAACTTGGGCTGCATGTTTCATTCAAGCTGCTTGGAGAAGGCATAAGAAGAGAAAGGATCTTGCTGGATTAAGAGCAAAGGAGAATAATAATAATAATCATATTAATAATAATAATGATTATGTAACAGTTTCTGAGCCTGAGACTCCAACATCAAGGGCTGTGATGATGAGTGGTAGGAAAAGTGTTAGTAGGTCAGATTCTGGTGTAGTTAGCTCTGTGCAGAAGCCAGCTGAGCCTGACTTTTCGGTTGATGAATGA	2100	0.4105	MGFGNSRSVRFEDDLELPNKKSESNNGMKVKYHIDGTQIAEASSNKKAGNKFLKGRVLSRVFSEDYERVKRRKIILDPRGQAIHRWNKIFLVASLVSLFVDPLFFYLPVVQDEVCIDIGVTLEVALTLIRTVGDAFYVIQIFAKFRTAYVAPSSRVFGRGELVIDTSKIAVKYLFKGFWLDFLAALPIPQVLIWIIIPTLRGSTMANTKNVLRFFIIFQYVPRLYLIFPLSSQIVSATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRNVCNVEKPFCEYAFFDCRRVGNSKRDLWFLASNITNLCSPDSNFYQFGIYADAVTSQVTSSSFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWMATRGVDEEALLKGLPLDLRRDIKRHLCLDLVRGVPLFDQMDESMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAFSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKDLAGLRAKENNNNNHINNNNDYVTVSEPETPTSRAVMMSGRKSVSRSDSGVVSSVQKPAEPDFSVDE*	700

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy18g0501	699	SUPERFAMILY	cAMP-binding domain-like	408	604	IPR018490	-
Ahy18g0501	699	PANTHER	-	4	699	-	-
Ahy18g0501	699	MobiDBLite	consensus disorder prediction	639	699	-	-
Ahy18g0501	699	Pfam	Ion transport protein	86	405	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
Ahy18g0501	699	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	4	699	-	-
Ahy18g0501	699	Gene3D	-	89	402	-	-
Ahy18g0501	699	Gene3D	Jelly Rolls	476	596	IPR014710	-
Ahy18g0501	699	ProSiteProfiles	cAMP/cGMP binding motif profile.	478	563	IPR000595	-
Ahy18g0501	699	MobiDBLite	consensus disorder prediction	639	686	-	-
Ahy18g0501	699	SMART	cnmp_10	478	609	IPR000595	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g0501	Ahy-Chr18	4620267	4623757	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy18g0501	48	698	Ion Channels	AT2G28260	76.037	0.0	1028

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g0501	K05391		-	gmx:100786868	1148.65

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy18g0501	18	4620267	4623757	Ahy18g0501	18	4620267	4623757	ECH
Ahy18g0501	18	4620267	4623757	Ahy8g1307	8	28917547	28921172	hybridization
Ahy18g0501	18	4620267	4623757	Ahy3g0139	3	1517814	1522171	PCT
Ahy3g0139	3	1517814	1522171	Ahy18g0501	18	4620267	4623757	PCT

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