Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0492 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCTTGTGCCGGTGGCATGGTTCAGATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCATGCCGAGCATGCACAAACTAACGTTGATCTGGGAGCTCCCCTGAGGGTTCCTTCCTTCATCCTCTGCCGCGTGGCGCAGGTGAAATTCCTTGCTGACCCTGAAACCGATGAAGTCTTTACAAGGATGAGCTTGGTTCCCCTGAGGAATTCAGAGCTTGATTCTGATGATGGCGGTGTCCTTGATGCCAATGCTTTGGAGAATTCAGAAAAGCCTGCTTCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGTGCAGAAACAATCTTCCCCCGACTCGATTACTCCGCAGAGCCGCCGGTTCAGACCGTGATCGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTCAGGCACATATATAGGGGCACACCGAGGAGGCACTTGCTCACAACAGGGTGGAGCAGTTTTGTCAACCAGAAGAAACTGGTTGCAGGGGATTCAATTGTGTTCCTGAGGGCCGAAAATGGTGATCTCTGTGTTGGGATTAGGCGTGCCAAGAGGGGAACAGGTGGAGGATCGGAGGCGCCATCGGGATGGAGCTCCGGGAATGGAAGTTGTGGCCTTGGCTCTTATGGAGCATTCTCTGCCTTCTTGAGAGAGGAGACCAAGCTGTTGAGGAATGGTTGTGGGAATTCGAGTCCCGGTGGTGGCGGCAGTGGTTTGAATGGAAAAGCTAAAGTAAGTCCTGAATCTGTGAGGGAGGCTATAACACTGGCTGCTAGCAATCAGCCATTTGAAGTTGTTTATTATCCAAGGGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGGCTGTGAGGGCAGCAATGAGGATACAATGGAGCACTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAGCATGCCAGCCATCAATCTATCGCCCTTCTCTCCGCCAAGGAAGAAACTCCGGTTTCCACAACACCCCGACTTCCCCCTCGACGTTCAATTTCCTATACCGTCGTTTTCAGGCAACCCCCTAGGGCCTCATAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCTACCTTAACAACAAACTGCAGTTGGGGGTGATTCCGGCCGCGAATGTTCAGCGACTGGATTTGCATTCGGGGTTTCCCAGTGGCGGCAACTTCACTGGCCATGACAAGAGTAAAGAAAGCTTGTCATGCTTGCTAACCATGGGAAATTCTCACAATAAGAGTTTGGAGAAGTCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCCAGAAGGCCTTCTTCTTCTGGTGGTGATGATGATGTGTTGCCTCAGAATGGTACCAAGAAAACTTCAATAGATGAGAATGAGAACAAAGACAAAGACAAAGAGAAGTGGTTTTTCAATGACTCTCAATCTCCTCTTTCACAACAATTTTCACCTGGTAAATCAAAATCATCTTGTAGCACAGAGTTATCTTGGCAAATTGGGTTGGATACTGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGACCTGTCACGTCTTAGCTCCTATGATGAACTGTATAGGAGACTCAGCAACATGTTTGGAATCGAAAGATCTGAGTTGTTGAGTCATGTACTCTACCGTGATGCAACTGGTGCTGTCAAGCAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATCCAAGCAACAAGGATGCAAGGAGGGCATGGATTACAGGTACTCGTAATGGTGAACATGGATTGGATGCATCAAACAAGACAGGTCCTCTTAGCATATTTGCTTGA 2178 0.4798 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQTNVDLGAPLRVPSFILCRVAQVKFLADPETDEVFTRMSLVPLRNSELDSDDGGVLDANALENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGTGGGSEAPSGWSSGNGSCGLGSYGAFSAFLREETKLLRNGCGNSSPGGGGSGLNGKAKVSPESVREAITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMPAINLSPFSPPRKKLRFPQHPDFPLDVQFPIPSFSGNPLGPHSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLNNKLQLGVIPAANVQRLDLHSGFPSGGNFTGHDKSKESLSCLLTMGNSHNKSLEKSDNVKRHQFLLFGQPILTEQQISRRPSSSGGDDDVLPQNGTKKTSIDENENKDKDKEKWFFNDSQSPLSQQFSPGKSKSSCSTELSWQIGLDTGHCKVFMESEDVGRTLDLSRLSSYDELYRRLSNMFGIERSELLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDPSNKDARRAWITGTRNGEHGLDASNKTGPLSIFA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0492 725 PANTHER AUXIN RESPONSE FACTOR 2 702 - -
Ahy18g0492 725 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Ahy18g0492 725 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Ahy18g0492 725 Gene3D - 319 393 - -
Ahy18g0492 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy18g0492 725 Gene3D - 612 696 - -
Ahy18g0492 725 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy18g0492 725 SMART B3_2 111 213 IPR003340 GO:0003677
Ahy18g0492 725 CDD B3_DNA 110 211 IPR003340 GO:0003677
Ahy18g0492 725 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Ahy18g0492 725 Gene3D - 109 213 IPR015300 -
Ahy18g0492 725 MobiDBLite consensus disorder prediction 540 564 - -
Ahy18g0492 725 SUPERFAMILY DNA-binding pseudobarrel domain 104 217 IPR015300 -
Ahy18g0492 725 MobiDBLite consensus disorder prediction 540 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0492 Ahy-Chr18 4500431 4504490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0492 5 691 B3 DNA Binding Superfamily AT4G30080 58.369 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy18g0492 B3 4.70E-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0492 - - gmx:100778135 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0492 18 4500431 4504490 Ahy18g0492 18 4500431 4504490 ECH
Ahy18g0492 18 4500431 4504490 Ahy13g0333 13 3391388 3395119 ECH
Ahy12g3074 12 120203136 120206994 Ahy18g0492 18 4500431 4504490 ECH
Ahy18g0492 18 4500431 4504490 Ahy8g1301 8 28777729 28781811 hybridization
Ahy18g0492 18 4500431 4504490 Ahy13g0333 13 3391388 3395119 PCT
Ahy13g0333 13 3391388 3395119 Ahy18g0492 18 4500431 4504490 PCT