Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0479 ATGATCAGTTTCTGTAATTGTTTTGGGATAATCAAGAAAGGAAAAAATGAAAGGGCTAAGCAAAGTGTAAAAAAAATTTTCTCACGGGGACTGTTGCGTGGAGAAACAGATGATTTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAAGTGACAGCCAGCCTCGAGCCAACCGATCGGAGGAAATTTTGAACTTGAGAGCAGAGAAGGACATGGCTTGTAGGCGGGTACCTGTTAAGGAGACCAACAAACTTGTTCGTGAAGAGGATGAAGATGGGAACAAAATGATCAATGAGTATGTTCGGGAGTACAGGATTGGTTCAGGTAGTTATGGCAAAGTGGTTCTATATCGAAGTATTGTAGATGGAAAGCATTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTGAAGCTTCGAGTTGCAGGCTCTGAGACCGCCATGTCTGACGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATTGCTTCTACATGGTGCTAGAATATGTGGAGGGCAAATGGTTTTGTGAGGGTTCAGGTCGTGGTTGTGCCTTGGTGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCGGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCCGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGACAATAATGATATACTTTATCGATCACCTGGCACGCCTGTTTTCTCTGCACCAGAATGTTGTGTAGGTGGTACGTATCATGGTAAAGCTTCAGACACATGGGCAGTTGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCATTTCTCGGAAAAACGCTTCCAGATACATATGAAAAAATAGTCAATAATCCATTAGTACTCCCGGATGACATTAACCCACAATTAAAGAACTTGATTGAAGGACTACTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGCTGGGTTATTGGAGATGATGGGCCCATCAGTGAATACTTGTGTTGGTGCAAACAGAAGAGGCTTCTGGTGGAACAAGAACACCACCCTTAG 1179 0.4131 MISFCNCFGIIKKGKNERAKQSVKKIFSRGLLRGETDDFSYSGEFTSNTTSGDESDSQPRANRSEEILNLRAEKDMACRRVPVKETNKLVREEDEDGNKMINEYVREYRIGSGSYGKVVLYRSIVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKWFCEGSGRGCALVEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDNNDILYRSPGTPVFSAPECCVGGTYHGKASDTWAVGVTLYCMIMGEYPFLGKTLPDTYEKIVNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHSWVIGDDGPISEYLCWCKQKRLLVEQEHHP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0479 392 CDD STKc_LKB1_CaMKK 110 365 - -
Ahy18g0479 392 ProSiteProfiles Protein kinase domain profile. 104 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0479 392 SUPERFAMILY Protein kinase-like (PK-like) 100 378 IPR011009 -
Ahy18g0479 392 Gene3D Transferase(Phosphotransferase) domain 1 94 389 - -
Ahy18g0479 392 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Ahy18g0479 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Ahy18g0479 392 MobiDBLite consensus disorder prediction 42 57 - -
Ahy18g0479 392 MobiDBLite consensus disorder prediction 42 62 - -
Ahy18g0479 392 Pfam Protein kinase domain 104 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0479 392 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 2 389 - -
Ahy18g0479 392 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 2 389 - -
Ahy18g0479 392 SMART serkin_6 104 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0479 Ahy-Chr18 4263874 4268617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0479 110 372 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 1.86e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Ahy18g0479 Pkinase 4.30E-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0479 K00908 - gmx:100776013 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0479 18 4263874 4268617 Ahy18g0479 18 4263874 4268617 ECH