Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0462 ATGGAGGCAAGTGACACAAATACCCCTATTTCTTCTTCTCAGTCTCCAACATCCTCATCTTCTCTTCCACCTCCGCCGCAGCCTACAGCAGCGCAAGTGATAATGAGCCCTTGCGCTGCTTGTAAAATTCTTCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTATTTTCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGAGTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAGGTGCAAGGATAAGAGATCCGGTTTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAAGTCAATGAGCTTCAAGCACAGTTAGCCAAGGCTCAAGCTGAGATTGCCAACATGCAGTTTCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGGCTAATAAGGCTACCGCCACCACACAAGAACCGCCACCGTCACCGCAACAATCGGTGGACAACTTCATTGCAAGCCCTCCTCACATCAACAATAATCTCAACTTCTTTGACGACAACACTAGCCTCAACTCCATGTGGGAGCTTTTTGGACATGACCATATCACTACGTTTTAA 645 0.4915 MEASDTNTPISSSQSPTSSSSLPPPPQPTAAQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEIANMQFQQANMVALLYMQMAEANKATATTQEPPPSPQQSVDNFIASPPHINNNLNFFDDNTSLNSMWELFGHDHITTF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0462 214 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Ahy18g0462 214 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Ahy18g0462 214 MobiDBLite consensus disorder prediction 161 180 - -
Ahy18g0462 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 205 - -
Ahy18g0462 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 205 - -
Ahy18g0462 214 Coils Coil 116 143 - -
Ahy18g0462 214 MobiDBLite consensus disorder prediction 1 18 - -
Ahy18g0462 214 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0462 Ahy-Chr18 4082994 4085060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0462 2 195 AS2 family AT2G28500 59.694 5.86e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy18g0462 LOB 5.40E-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0462 18 4082994 4085060 Ahy18g0462 18 4082994 4085060 ECH
Ahy18g0462 18 4082994 4085060 Ahy13g0381 13 3830683 3833398 ECH
Ahy18g0462 18 4082994 4085060 Ahy8g1271 8 28272190 28273959 hybridization
Ahy18g0462 18 4082994 4085060 Ahy13g0381 13 3830683 3833398 PCT
Ahy13g0381 13 3830683 3833398 Ahy18g0462 18 4082994 4085060 PCT